Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZLW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZLW entry

There are 3 chains in PDB entry 8ZLW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 370
N
 THR 3LYS 146
R
 ASP 2HIS 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 8ZLW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 32Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
53 55Right-handed 310
Helix 4
AA4
A
67 74Right-handed alpha
Helix 5
AA5
A
83 89Right-handed alpha
Helix 6
AA6
A
91 96Right-handed alpha
Helix 7
AA7
A
132 142Right-handed alpha
Helix 8
AA8
A
154 165Right-handed alpha
Helix 9
AA9
A
186 202Right-handed alpha
Helix 10
AB1
A
210 220Right-handed alpha
Helix 11
AB2
A
229 231Right-handed 310
Helix 12
AB3
A
232 240Right-handed alpha
Helix 13
AB4
A
273 282Right-handed alpha
Helix 14
AB5
A
287 298Right-handed alpha
Helix 15
AB6
A
305 313Right-handed alpha
Helix 16
AB7
A
315 327Right-handed alpha
Helix 17
AB8
A
336 353Right-handed alpha
Helix 18
AB9
A
357 368Right-handed alpha
Helix 19
AC1
N
4 18Right-handed alpha
Helix 20
AC2
N
26 37Right-handed alpha
Helix 21
AC3
N
42 52Right-handed alpha
Helix 22
AC4
N
63 72Right-handed alpha
Helix 23
AC5
N
78 91Right-handed alpha
Helix 24
AC6
N
99 111Right-handed alpha
Helix 25
AC7
N
115 127Right-handed alpha
Helix 26
AC8
N
135 145Right-handed alpha
Helix 27
AC9
R
2 17Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8ZLW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
302 303anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
329 330parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
24 25first strand
Strand 2
N
61 62anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il