Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZM3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZM3 entry

There are 11 chains in PDB entry 8ZM3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G -7	G 52
C	VAL 80	PRO 522
E	ASN 2	ILE 166
F	MET 1	SER 372
H	MET 1	LYS 373
I	MET 1	LYS 373
J	MET 1	ALA 374
K	MET 1	LYS 373
G	MET 1	TRP 366
B	PRO 4	MET 381
D	MET 1	ILE 268

There are117 helices in PDB entry 8ZM3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	103	111	Right-handed alpha
Helix 2	AA2	C	120	143	Right-handed alpha
Helix 3	AA3	C	155	163	Right-handed alpha
Helix 4	AA4	C	164	167	Right-handed 310
Helix 5	AA5	C	215	224	Right-handed alpha
Helix 6	AA6	C	255	261	Right-handed alpha
Helix 7	AA7	C	288	293	Right-handed alpha
Helix 8	AA8	C	372	376	Right-handed 310
Helix 9	AA9	C	418	427	Right-handed alpha
Helix 10	AB1	C	428	437	Right-handed alpha
Helix 11	AB2	C	450	465	Right-handed alpha
Helix 12	AB3	C	467	474	Right-handed alpha
Helix 13	AB4	C	478	484	Right-handed alpha
Helix 14	AB5	C	486	498	Right-handed alpha
Helix 15	AB6	C	502	513	Right-handed alpha
Helix 16	AB7	E	4	14	Right-handed alpha
Helix 17	AB8	E	16	26	Right-handed alpha
Helix 18	AB9	E	34	52	Right-handed alpha
Helix 19	AC1	E	57	72	Right-handed alpha
Helix 20	AC2	E	80	88	Right-handed alpha
Helix 21	AC3	E	89	92	Right-handed 310
Helix 22	AC4	E	96	107	Right-handed alpha
Helix 23	AC5	E	108	111	Right-handed 310
Helix 24	AC6	E	112	116	Right-handed 310
Helix 25	AC7	E	117	130	Right-handed alpha
Helix 26	AC8	E	136	145	Right-handed alpha
Helix 27	AC9	E	149	155	Right-handed alpha
Helix 28	AD1	E	155	166	Right-handed alpha
Helix 29	AD2	F	38	48	Right-handed alpha
Helix 30	AD3	F	52	56	Right-handed 310
Helix 31	AD4	F	63	71	Right-handed alpha
Helix 32	AD5	F	78	89	Right-handed alpha
Helix 33	AD6	F	105	117	Right-handed alpha
Helix 34	AD7	F	121	136	Right-handed alpha
Helix 35	AD8	F	139	146	Right-handed alpha
Helix 36	AD9	F	223	230	Right-handed alpha
Helix 37	AE1	F	234	250	Right-handed alpha
Helix 38	AE2	F	280	285	Right-handed 310
Helix 39	AE3	F	295	313	Right-handed alpha
Helix 40	AE4	F	329	332	Right-handed 310
Helix 41	AE5	F	349	362	Right-handed alpha
Helix 42	AE6	H	38	48	Right-handed alpha
Helix 43	AE7	H	63	73	Right-handed alpha
Helix 44	AE8	H	77	89	Right-handed alpha
Helix 45	AE9	H	92	96	Right-handed 310
Helix 46	AF1	H	107	116	Right-handed alpha
Helix 47	AF2	H	122	134	Right-handed alpha
Helix 48	AF3	H	139	146	Right-handed alpha
Helix 49	AF4	H	223	230	Right-handed alpha
Helix 50	AF5	H	233	251	Right-handed alpha
Helix 51	AF6	H	280	286	Right-handed 310
Helix 52	AF7	H	295	315	Right-handed alpha
Helix 53	AF8	H	329	332	Right-handed 310
Helix 54	AF9	H	349	362	Right-handed alpha
Helix 55	AG1	H	365	371	Right-handed alpha
Helix 56	AG2	I	38	49	Right-handed alpha
Helix 57	AG3	I	50	53	Right-handed 310
Helix 58	AG4	I	64	69	Right-handed alpha
Helix 59	AG5	I	80	88	Right-handed alpha
Helix 60	AG6	I	105	116	Right-handed alpha
Helix 61	AG7	I	124	134	Right-handed alpha
Helix 62	AG8	I	139	146	Right-handed alpha
Helix 63	AG9	I	223	230	Right-handed alpha
Helix 64	AH1	I	235	250	Right-handed alpha
Helix 65	AH2	I	281	285	Right-handed 310
Helix 66	AH3	I	295	315	Right-handed alpha
Helix 67	AH4	I	329	332	Right-handed 310
Helix 68	AH5	I	349	363	Right-handed alpha
Helix 69	AH6	I	365	370	Right-handed alpha
Helix 70	AH7	I	371	373	Right-handed 310
Helix 71	AH8	J	38	48	Right-handed alpha
Helix 72	AH9	J	63	73	Right-handed alpha
Helix 73	AI1	J	77	89	Right-handed alpha
Helix 74	AI2	J	92	96	Right-handed 310
Helix 75	AI3	J	108	116	Right-handed alpha
Helix 76	AI4	J	123	133	Right-handed alpha
Helix 77	AI5	J	134	136	Right-handed 310
Helix 78	AI6	J	223	230	Right-handed alpha
Helix 79	AI7	J	233	250	Right-handed alpha
Helix 80	AI8	J	280	285	Right-handed 310
Helix 81	AI9	J	295	313	Right-handed alpha
Helix 82	AJ1	J	349	363	Right-handed alpha
Helix 83	AJ2	J	365	370	Right-handed alpha
Helix 84	AJ3	K	28	32	Right-handed 310
Helix 85	AJ4	K	42	47	Right-handed alpha
Helix 86	AJ5	K	84	89	Right-handed alpha
Helix 87	AJ6	K	124	129	Right-handed 310
Helix 88	AJ7	K	234	250	Right-handed alpha
Helix 89	AJ8	K	300	313	Right-handed alpha
Helix 90	AJ9	K	349	359	Right-handed alpha
Helix 91	AK1	K	365	371	Right-handed alpha
Helix 92	AK2	G	38	43	Right-handed alpha
Helix 93	AK3	G	223	230	Right-handed alpha
Helix 94	AK4	G	234	250	Right-handed alpha
Helix 95	AK5	G	280	285	Right-handed 310
Helix 96	AK6	G	295	309	Right-handed alpha
Helix 97	AK7	G	349	362	Right-handed alpha
Helix 98	AK8	B	36	49	Right-handed alpha
Helix 99	AK9	B	59	65	Right-handed alpha
Helix 100	AL1	B	106	111	Right-handed alpha
Helix 101	AL2	B	144	157	Right-handed alpha
Helix 102	AL3	B	185	193	Right-handed alpha
Helix 103	AL4	B	280	294	Right-handed alpha
Helix 104	AL5	B	329	339	Right-handed alpha
Helix 105	AL6	B	354	356	Right-handed 310
Helix 106	AL7	B	357	372	Right-handed alpha
Helix 107	AL8	B	373	378	Right-handed alpha
Helix 108	AL9	D	19	25	Right-handed alpha
Helix 109	AM1	D	27	37	Right-handed alpha
Helix 110	AM2	D	43	48	Right-handed alpha
Helix 111	AM3	D	56	60	Right-handed 310
Helix 112	AM4	D	91	96	Right-handed alpha
Helix 113	AM5	D	99	103	Right-handed 310
Helix 114	AM6	D	166	177	Right-handed alpha
Helix 115	AM7	D	178	183	Right-handed alpha
Helix 116	AM8	D	240	248	Right-handed alpha
Helix 117	AM9	D	255	259	Right-handed 310

There are 30 sheets in PDB entry 8ZM3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	90	94	anti-parallel
Strand 3	C	114	116	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	324	329	anti-parallel
Strand 3	C	297	299	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	252	first strand
Strand 2	C	388	398	anti-parallel
Strand 3	C	401	412	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	134	135	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	176	178	anti-parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	176	178	anti-parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	2	10	anti-parallel
Strand 6	F	268	274	anti-parallel
Strand 7	F	325	327	anti-parallel
Strand 8	F	345	347	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	101	104	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	187	first strand
Strand 2	F	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	214	222	anti-parallel
Strand 5	H	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	214	222	anti-parallel
Strand 5	H	2	10	anti-parallel
Strand 6	H	268	274	anti-parallel
Strand 7	H	323	327	anti-parallel
Strand 8	H	345	347	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	101	104	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	187	first strand
Strand 2	H	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	214	222	anti-parallel
Strand 5	I	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	214	222	anti-parallel
Strand 5	I	2	10	anti-parallel
Strand 6	I	268	274	anti-parallel
Strand 7	I	325	327	anti-parallel
Strand 8	I	345	347	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	187	first strand
Strand 2	I	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	29	first strand
Strand 2	J	32	37	anti-parallel
Strand 3	J	176	178	anti-parallel
Strand 4	J	214	222	anti-parallel
Strand 5	J	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	29	first strand
Strand 2	J	32	37	anti-parallel
Strand 3	J	176	178	anti-parallel
Strand 4	J	214	222	anti-parallel
Strand 5	J	2	10	anti-parallel
Strand 6	J	266	274	anti-parallel
Strand 7	J	323	327	anti-parallel
Strand 8	J	345	347	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	187	first strand
Strand 2	J	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	172	177	first strand
Strand 2	K	214	221	anti-parallel
Strand 3	K	3	10	anti-parallel
Strand 4	K	269	272	anti-parallel
Strand 5	K	325	327	anti-parallel
Strand 6	K	346	347	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	60	61	first strand
Strand 2	K	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	171	173	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	2	10	anti-parallel
Strand 6	G	268	272	anti-parallel
Strand 7	G	324	327	anti-parallel
Strand 8	G	345	347	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	187	first strand
Strand 2	G	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	17	first strand
Strand 2	B	125	142	anti-parallel
Strand 3	B	77	85	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	125	142	parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	207	213	anti-parallel
Strand 5	B	241	253	anti-parallel
Strand 6	B	228	236	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	120	121	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	325	328	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	80	86	anti-parallel
Strand 3	D	2	9	anti-parallel
Strand 4	D	108	112	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	205	first strand
Strand 2	D	219	238	anti-parallel
Strand 3	D	121	128	anti-parallel
Strand 4	D	264	267	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	140	first strand
Strand 2	D	147	158	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZM3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZM3