Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZM7 entry

There are 4 chains in PDB entry 8ZM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	GLU 323
B	SER 3	TYR 322
C	SER 3	GLU 323
D	SER 3	TYR 316

There are 43 helices in PDB entry 8ZM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	22	Right-handed alpha
Helix 2	AA2	A	50	55	Right-handed alpha
Helix 3	AA3	A	72	87	Right-handed alpha
Helix 4	AA4	A	94	110	Right-handed alpha
Helix 5	AA5	A	131	136	Right-handed 310
Helix 6	AA6	A	152	159	Right-handed alpha
Helix 7	AA7	A	185	198	Right-handed alpha
Helix 8	AA8	A	238	251	Right-handed alpha
Helix 9	AA9	A	261	268	Right-handed alpha
Helix 10	AB1	A	297	310	Right-handed alpha
Helix 11	AB2	A	311	313	Right-handed 310
Helix 12	AB3	B	4	22	Right-handed alpha
Helix 13	AB4	B	50	55	Right-handed alpha
Helix 14	AB5	B	72	87	Right-handed alpha
Helix 15	AB6	B	94	110	Right-handed alpha
Helix 16	AB7	B	131	136	Right-handed 310
Helix 17	AB8	B	152	159	Right-handed alpha
Helix 18	AB9	B	185	198	Right-handed alpha
Helix 19	AC1	B	238	251	Right-handed alpha
Helix 20	AC2	B	261	266	Right-handed alpha
Helix 21	AC3	B	297	310	Right-handed alpha
Helix 22	AC4	B	311	313	Right-handed 310
Helix 23	AC5	C	4	21	Right-handed alpha
Helix 24	AC6	C	50	55	Right-handed alpha
Helix 25	AC7	C	72	87	Right-handed alpha
Helix 26	AC8	C	94	110	Right-handed alpha
Helix 27	AC9	C	132	136	Right-handed 310
Helix 28	AD1	C	152	159	Right-handed alpha
Helix 29	AD2	C	185	198	Right-handed alpha
Helix 30	AD3	C	238	251	Right-handed alpha
Helix 31	AD4	C	261	268	Right-handed alpha
Helix 32	AD5	C	297	310	Right-handed alpha
Helix 33	AD6	C	311	313	Right-handed 310
Helix 34	AD7	D	4	21	Right-handed alpha
Helix 35	AD8	D	50	55	Right-handed alpha
Helix 36	AD9	D	72	87	Right-handed alpha
Helix 37	AE1	D	94	110	Right-handed alpha
Helix 38	AE2	D	131	136	Right-handed 310
Helix 39	AE3	D	152	159	Right-handed alpha
Helix 40	AE4	D	185	198	Right-handed alpha
Helix 41	AE5	D	238	251	Right-handed alpha
Helix 42	AE6	D	261	266	Right-handed alpha
Helix 43	AE7	D	297	311	Right-handed alpha

There are 18 sheets in PDB entry 8ZM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	31	34	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	114	121	anti-parallel
Strand 5	A	58	61	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	31	34	anti-parallel
Strand 3	A	139	146	anti-parallel
Strand 4	A	114	121	anti-parallel
Strand 5	A	64	66	anti-parallel
Strand 6	A	69	71	anti-parallel
Strand 7	A	317	319	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	B	45	47	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	227	230	parallel
Strand 3	A	218	224	anti-parallel
Strand 4	A	212	215	anti-parallel
Strand 5	A	202	206	anti-parallel
Strand 6	A	160	164	parallel
Strand 7	A	279	286	parallel
Strand 8	A	289	290	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	227	230	parallel
Strand 3	A	218	224	anti-parallel
Strand 4	A	270	275	anti-parallel
Strand 5	A	279	286	anti-parallel
Strand 6	A	289	290	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	31	34	anti-parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	114	121	anti-parallel
Strand 5	B	58	61	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	31	34	anti-parallel
Strand 3	B	139	146	anti-parallel
Strand 4	B	114	121	anti-parallel
Strand 5	B	64	66	anti-parallel
Strand 6	B	69	71	anti-parallel
Strand 7	B	317	319	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	215	first strand
Strand 2	B	202	206	anti-parallel
Strand 3	B	160	164	parallel
Strand 4	B	279	286	parallel
Strand 5	B	270	275	anti-parallel
Strand 6	B	219	224	anti-parallel
Strand 7	B	227	231	anti-parallel
Strand 8	B	255	258	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	215	first strand
Strand 2	B	202	206	anti-parallel
Strand 3	B	160	164	parallel
Strand 4	B	279	286	parallel
Strand 5	B	289	290	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	31	34	anti-parallel
Strand 3	C	139	146	anti-parallel
Strand 4	C	114	121	anti-parallel
Strand 5	C	58	61	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	31	34	anti-parallel
Strand 3	C	139	146	anti-parallel
Strand 4	C	114	121	anti-parallel
Strand 5	C	64	66	anti-parallel
Strand 6	C	69	71	anti-parallel
Strand 7	C	317	319	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	D	45	47	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	227	230	parallel
Strand 3	C	218	224	anti-parallel
Strand 4	C	212	215	anti-parallel
Strand 5	C	202	206	anti-parallel
Strand 6	C	160	164	parallel
Strand 7	C	279	286	parallel
Strand 8	C	289	290	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	227	230	parallel
Strand 3	C	218	224	anti-parallel
Strand 4	C	270	275	anti-parallel
Strand 5	C	279	286	anti-parallel
Strand 6	C	289	290	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	31	34	anti-parallel
Strand 3	D	139	146	anti-parallel
Strand 4	D	114	121	anti-parallel
Strand 5	D	58	61	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	40	first strand
Strand 2	D	31	34	anti-parallel
Strand 3	D	139	146	anti-parallel
Strand 4	D	114	121	anti-parallel
Strand 5	D	64	66	anti-parallel
Strand 6	D	69	71	anti-parallel
Strand 7	D	317	319	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	215	first strand
Strand 2	D	202	206	anti-parallel
Strand 3	D	160	164	parallel
Strand 4	D	279	286	parallel
Strand 5	D	270	275	anti-parallel
Strand 6	D	219	224	anti-parallel
Strand 7	D	227	231	anti-parallel
Strand 8	D	254	258	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	215	first strand
Strand 2	D	202	206	anti-parallel
Strand 3	D	160	164	parallel
Strand 4	D	279	286	parallel
Strand 5	D	289	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZM7