Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZME entry

There are 5 chains in PDB entry 8ZME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 8	GLN 230
B	GLU 3	ASN 340
E	VAL 2	LEU 248
G	THR 6	ARG 62
R	SER 37	ALA 358

There are 32 helices in PDB entry 8ZME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	31	Right-handed alpha
Helix 2	AA2	A	45	52	Right-handed alpha
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	94	98	Right-handed 310
Helix 5	AA5	A	117	130	Right-handed alpha
Helix 6	AA6	A	147	154	Right-handed alpha
Helix 7	AA7	A	157	161	Right-handed 310
Helix 8	AA8	A	171	185	Right-handed alpha
Helix 9	AA9	A	206	227	Right-handed alpha
Helix 10	AB1	B	4	25	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	E	28	32	Right-handed 310
Helix 13	AB4	E	53	56	Right-handed 310
Helix 14	AB5	E	87	91	Right-handed 310
Helix 15	AB6	G	7	24	Right-handed alpha
Helix 16	AB7	G	29	44	Right-handed alpha
Helix 17	AB8	G	45	48	Right-handed 310
Helix 18	AB9	R	62	70	Right-handed alpha
Helix 19	AC1	R	76	103	Right-handed alpha
Helix 20	AC2	R	108	126	Right-handed alpha
Helix 21	AC3	R	127	138	Right-handed alpha
Helix 22	AC4	R	143	179	Right-handed alpha
Helix 23	AC5	R	187	204	Right-handed alpha
Helix 24	AC6	R	205	210	Right-handed 310
Helix 25	AC7	R	232	236	Right-handed alpha
Helix 26	AC8	R	237	250	Right-handed alpha
Helix 27	AC9	R	251	270	Right-handed alpha
Helix 28	AD1	R	275	277	Right-handed 310
Helix 29	AD2	R	278	315	Right-handed alpha
Helix 30	AD3	R	322	335	Right-handed alpha
Helix 31	AD4	R	335	345	Right-handed alpha
Helix 32	AD5	R	349	358	Right-handed alpha

There are 14 sheets in PDB entry 8ZME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	76	first strand
Strand 2	A	79	85	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	105	111	parallel
Strand 5	A	138	144	parallel
Strand 6	A	195	200	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	143	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	212	217	anti-parallel
Strand 4	E	204	209	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	227	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	187	191	anti-parallel
Strand 6	E	195	196	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	38	40	first strand
Strand 2	R	229	231	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	215	218	first strand
Strand 2	R	223	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZME

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZME