Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZMI entry

There are 3 chains in PDB entry 8ZMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 31LYS 379
B
 PRO 31LYS 379
C
 C 1 A 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8ZMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
47 58Right-handed alpha
Helix 3
AA3
A
74 91Right-handed alpha
Helix 4
AA4
A
100 107Right-handed alpha
Helix 5
AA5
A
109 112Right-handed 310
Helix 6
AA6
A
113 132Right-handed alpha
Helix 7
AA7
A
145 152Right-handed alpha
Helix 8
AA8
A
152 167Right-handed alpha
Helix 9
AA9
A
168 174Right-handed alpha
Helix 10
AB1
A
189 206Right-handed alpha
Helix 11
AB2
A
216 230Right-handed alpha
Helix 12
AB3
A
268 279Right-handed alpha
Helix 13
AB4
A
289 304Right-handed alpha
Helix 14
AB5
A
322 333Right-handed alpha
Helix 15
AB6
A
336 362Right-handed alpha
Helix 16
AB7
A
362 375Right-handed alpha
Helix 17
AB8
B
32 40Right-handed alpha
Helix 18
AB9
B
47 58Right-handed alpha
Helix 19
AC1
B
74 92Right-handed alpha
Helix 20
AC2
B
100 107Right-handed alpha
Helix 21
AC3
B
108 112Right-handed 310
Helix 22
AC4
B
113 132Right-handed alpha
Helix 23
AC5
B
134 138Right-handed 310
Helix 24
AC6
B
145 152Right-handed alpha
Helix 25
AC7
B
156 167Right-handed alpha
Helix 26
AC8
B
168 176Right-handed alpha
Helix 27
AC9
B
189 205Right-handed alpha
Helix 28
AD1
B
213 215Right-handed 310
Helix 29
AD2
B
216 230Right-handed alpha
Helix 30
AD3
B
268 278Right-handed alpha
Helix 31
AD4
B
289 304Right-handed alpha
Helix 32
AD5
B
311 315Right-handed 310
Helix 33
AD6
B
322 333Right-handed alpha
Helix 34
AD7
B
336 362Right-handed alpha
Helix 35
AD8
B
362 375Right-handed alpha
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There are 5 sheets in PDB entry 8ZMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
237 240anti-parallel
Strand 3
A
209 211parallel
Strand 4
A
62 67parallel
Strand 5
A
94 99parallel
Strand 6
A
140 144parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
318 320anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
237 240anti-parallel
Strand 3
B
209 210parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
95 99parallel
Strand 3
B
140 144parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
318 320anti-parallel
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