Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZMK entry

There are 3 chains in PDB entry 8ZMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 31LYS 379
B
 PRO 31LYS 379
C
 C 1 A 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8ZMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 42Right-handed alpha
Helix 2
AA2
A
47 58Right-handed alpha
Helix 3
AA3
A
78 92Right-handed alpha
Helix 4
AA4
A
101 107Right-handed alpha
Helix 5
AA5
A
109 112Right-handed 310
Helix 6
AA6
A
113 131Right-handed alpha
Helix 7
AA7
A
145 152Right-handed alpha
Helix 8
AA8
A
156 166Right-handed alpha
Helix 9
AA9
A
168 175Right-handed alpha
Helix 10
AB1
A
189 205Right-handed alpha
Helix 11
AB2
A
213 215Right-handed 310
Helix 12
AB3
A
216 231Right-handed alpha
Helix 13
AB4
A
268 277Right-handed alpha
Helix 14
AB5
A
289 298Right-handed alpha
Helix 15
AB6
A
299 304Right-handed alpha
Helix 16
AB7
A
323 331Right-handed alpha
Helix 17
AB8
A
336 362Right-handed alpha
Helix 18
AB9
A
362 373Right-handed alpha
Helix 19
AC1
B
32 42Right-handed alpha
Helix 20
AC2
B
47 58Right-handed alpha
Helix 21
AC3
B
78 92Right-handed alpha
Helix 22
AC4
B
101 107Right-handed alpha
Helix 23
AC5
B
109 112Right-handed 310
Helix 24
AC6
B
113 131Right-handed alpha
Helix 25
AC7
B
145 152Right-handed alpha
Helix 26
AC8
B
156 166Right-handed alpha
Helix 27
AC9
B
168 175Right-handed alpha
Helix 28
AD1
B
189 205Right-handed alpha
Helix 29
AD2
B
213 215Right-handed 310
Helix 30
AD3
B
216 231Right-handed alpha
Helix 31
AD4
B
268 277Right-handed alpha
Helix 32
AD5
B
289 298Right-handed alpha
Helix 33
AD6
B
299 304Right-handed alpha
Helix 34
AD7
B
323 331Right-handed alpha
Helix 35
AD8
B
336 362Right-handed alpha
Helix 36
AD9
B
362 373Right-handed alpha
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There are 4 sheets in PDB entry 8ZMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
94 99parallel
Strand 3
A
140 144parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
318 320anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
94 99parallel
Strand 3
B
140 144parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
318 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il