Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZMP entry

There are 3 chains in PDB entry 8ZMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 20	VAL 1120
B	CYS 20	VAL 1120
C	CYS 20	VAL 1120

There are 54 helices in PDB entry 8ZMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	282	292	Right-handed alpha
Helix 2	AA2	A	352	358	Right-handed 310
Helix 3	AA3	A	372	377	Right-handed 310
Helix 4	AA4	A	404	410	Right-handed alpha
Helix 5	AA5	A	720	725	Right-handed alpha
Helix 6	AA6	A	731	739	Right-handed alpha
Helix 7	AA7	A	741	766	Right-handed alpha
Helix 8	AA8	A	799	809	Right-handed alpha
Helix 9	AA9	A	819	825	Right-handed alpha
Helix 10	AB1	A	826	830	Right-handed 310
Helix 11	AB2	A	831	838	Right-handed alpha
Helix 12	AB3	A	849	867	Right-handed alpha
Helix 13	AB4	A	869	873	Right-handed 310
Helix 14	AB5	A	880	891	Right-handed alpha
Helix 15	AB6	A	896	924	Right-handed alpha
Helix 16	AB7	A	928	948	Right-handed alpha
Helix 17	AB8	A	962	967	Right-handed alpha
Helix 18	AB9	A	968	1016	Right-handed alpha
Helix 19	AC1	B	282	292	Right-handed alpha
Helix 20	AC2	B	352	358	Right-handed 310
Helix 21	AC3	B	372	377	Right-handed 310
Helix 22	AC4	B	404	410	Right-handed alpha
Helix 23	AC5	B	720	725	Right-handed alpha
Helix 24	AC6	B	731	739	Right-handed alpha
Helix 25	AC7	B	741	766	Right-handed alpha
Helix 26	AC8	B	799	809	Right-handed alpha
Helix 27	AC9	B	819	825	Right-handed alpha
Helix 28	AD1	B	826	830	Right-handed 310
Helix 29	AD2	B	831	838	Right-handed alpha
Helix 30	AD3	B	849	867	Right-handed alpha
Helix 31	AD4	B	869	873	Right-handed 310
Helix 32	AD5	B	880	891	Right-handed alpha
Helix 33	AD6	B	896	924	Right-handed alpha
Helix 34	AD7	B	928	948	Right-handed alpha
Helix 35	AD8	B	962	967	Right-handed alpha
Helix 36	AD9	B	968	1016	Right-handed alpha
Helix 37	AE1	C	282	292	Right-handed alpha
Helix 38	AE2	C	352	358	Right-handed 310
Helix 39	AE3	C	372	377	Right-handed 310
Helix 40	AE4	C	404	410	Right-handed alpha
Helix 41	AE5	C	720	725	Right-handed alpha
Helix 42	AE6	C	731	739	Right-handed alpha
Helix 43	AE7	C	741	766	Right-handed alpha
Helix 44	AE8	C	799	809	Right-handed alpha
Helix 45	AE9	C	819	825	Right-handed alpha
Helix 46	AF1	C	826	830	Right-handed 310
Helix 47	AF2	C	831	838	Right-handed alpha
Helix 48	AF3	C	849	867	Right-handed alpha
Helix 49	AF4	C	869	873	Right-handed 310
Helix 50	AF5	C	880	891	Right-handed alpha
Helix 51	AF6	C	896	924	Right-handed alpha
Helix 52	AF7	C	928	948	Right-handed alpha
Helix 53	AF8	C	962	967	Right-handed alpha
Helix 54	AF9	C	968	1016	Right-handed alpha

There are 54 sheets in PDB entry 8ZMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	66	71	anti-parallel
Strand 3	A	252	257	anti-parallel
Strand 4	A	88	93	anti-parallel
Strand 5	A	180	191	anti-parallel
Strand 6	A	194	206	anti-parallel
Strand 7	A	216	224	anti-parallel
Strand 8	A	41	42	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	C	552	553	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	259	267	anti-parallel
Strand 3	A	273	278	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	114	118	anti-parallel
Strand 5	A	125	129	anti-parallel
Strand 6	A	160	165	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	147	148	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	302	first strand
Strand 2	A	582	586	anti-parallel
Strand 3	A	596	599	anti-parallel
Strand 4	A	636	638	anti-parallel
Strand 5	A	630	631	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	316	first strand
Strand 2	A	525	530	parallel
Strand 3	A	533	541	anti-parallel
Strand 4	A	571	575	anti-parallel
Strand 5	A	562	564	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	379	390	anti-parallel
Strand 3	A	511	512	anti-parallel
Strand 4	A	349	350	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	379	390	anti-parallel
Strand 3	A	495	504	anti-parallel
Strand 4	A	419	425	anti-parallel
Strand 5	A	364	365	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	479	481	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	553	first strand
Strand 2	B	47	48	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	642	first strand
Strand 2	A	674	679	parallel
Strand 3	A	657	662	anti-parallel
Strand 4	A	651	652	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	686	first strand
Strand 2	B	770	772	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	696	first strand
Strand 2	A	1057	1059	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	711	first strand
Strand 2	A	1042	1054	anti-parallel
Strand 3	A	1030	1039	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	841	844	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	772	first strand
Strand 2	C	684	686	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	A	783	784	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1064	1065	first strand
Strand 2	A	1069	1073	anti-parallel
Strand 3	A	1103	1108	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1077	1080	first strand
Strand 2	A	1085	1088	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	66	71	anti-parallel
Strand 3	B	252	257	anti-parallel
Strand 4	B	88	93	anti-parallel
Strand 5	B	180	191	anti-parallel
Strand 6	B	194	206	anti-parallel
Strand 7	B	216	224	anti-parallel
Strand 8	B	41	42	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	259	267	anti-parallel
Strand 3	B	273	278	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	114	118	anti-parallel
Strand 5	B	125	129	anti-parallel
Strand 6	B	160	165	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	147	148	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	302	first strand
Strand 2	B	582	586	anti-parallel
Strand 3	B	596	599	anti-parallel
Strand 4	B	636	638	anti-parallel
Strand 5	B	630	631	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	316	first strand
Strand 2	B	525	530	parallel
Strand 3	B	533	541	anti-parallel
Strand 4	B	571	575	anti-parallel
Strand 5	B	562	564	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	390	anti-parallel
Strand 3	B	511	512	anti-parallel
Strand 4	B	349	350	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	390	anti-parallel
Strand 3	B	495	504	anti-parallel
Strand 4	B	419	425	anti-parallel
Strand 5	B	364	365	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	479	481	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	C	47	48	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	642	first strand
Strand 2	B	674	679	parallel
Strand 3	B	657	662	anti-parallel
Strand 4	B	651	652	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	684	686	first strand
Strand 2	C	770	772	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	696	first strand
Strand 2	B	1057	1059	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	700	711	first strand
Strand 2	B	1042	1054	anti-parallel
Strand 3	B	1030	1039	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	719	first strand
Strand 2	B	841	844	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	B	783	784	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1064	1065	first strand
Strand 2	B	1069	1073	anti-parallel
Strand 3	B	1103	1108	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1077	1080	first strand
Strand 2	B	1085	1088	anti-parallel

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There are 8 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	35	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	252	257	anti-parallel
Strand 4	C	88	93	anti-parallel
Strand 5	C	180	191	anti-parallel
Strand 6	C	194	206	anti-parallel
Strand 7	C	216	224	anti-parallel
Strand 8	C	41	42	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	60	first strand
Strand 2	C	259	267	anti-parallel
Strand 3	C	273	278	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	231	236	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	114	118	anti-parallel
Strand 5	C	125	129	anti-parallel
Strand 6	C	160	165	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	147	148	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	302	first strand
Strand 2	C	582	586	anti-parallel
Strand 3	C	596	599	anti-parallel
Strand 4	C	636	638	anti-parallel
Strand 5	C	630	631	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	316	first strand
Strand 2	C	525	530	parallel
Strand 3	C	533	541	anti-parallel
Strand 4	C	571	575	anti-parallel
Strand 5	C	562	564	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	390	anti-parallel
Strand 3	C	511	512	anti-parallel
Strand 4	C	349	350	parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	390	anti-parallel
Strand 3	C	495	504	anti-parallel
Strand 4	C	419	425	anti-parallel
Strand 5	C	364	365	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	442	first strand
Strand 2	C	479	481	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	642	first strand
Strand 2	C	674	679	parallel
Strand 3	C	657	662	anti-parallel
Strand 4	C	651	652	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	696	first strand
Strand 2	C	1057	1059	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	711	first strand
Strand 2	C	1042	1054	anti-parallel
Strand 3	C	1030	1039	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	719	first strand
Strand 2	C	841	844	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	780	first strand
Strand 2	C	783	784	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1064	1065	first strand
Strand 2	C	1069	1073	anti-parallel
Strand 3	C	1103	1108	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1077	1080	first strand
Strand 2	C	1085	1088	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZMP