Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZMZ entry

There are 2 chains in PDB entry 8ZMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11PHE 355
A
 SER 359LEU 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8ZMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 42Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
61 68Right-handed alpha
Helix 4
AA4
A
77 82Right-handed 310
Helix 5
AA5
A
85 91Right-handed 310
Helix 6
AA6
A
100 111Right-handed alpha
Helix 7
AA7
A
112 123Right-handed alpha
Helix 8
AA8
A
147 152Right-handed 310
Helix 9
AA9
A
160 170Right-handed alpha
Helix 10
AB1
A
178 180Right-handed 310
Helix 11
AB2
A
181 195Right-handed alpha
Helix 12
AB3
A
347 355Right-handed 310
Helix 13
AB4
A
359 363Right-handed 310
Helix 14
AB5
A
371 376Right-handed alpha
Helix 15
AB6
A
444 451Right-handed alpha
Helix 16
AB7
A
452 457Right-handed alpha
Helix 17
AB8
A
483 489Right-handed alpha
Helix 18
AB9
A
490 526Right-handed alpha
Helix 19
AC1
A
534 554Right-handed alpha
Helix 20
AC2
A
556 573Right-handed alpha
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There are 4 sheets in PDB entry 8ZMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 51first strand
Strand 2
A
13 19parallel
Strand 3
A
73 75parallel
Strand 4
A
477 482anti-parallel
Strand 5
A
126 132anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
155 157parallel
Strand 3
A
438 441parallel
Strand 4
A
139 141anti-parallel
Strand 5
A
459 462anti-parallel
Strand 6
A
529 532parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
204 209anti-parallel
Strand 3
A
223 231anti-parallel
Strand 4
A
381 389anti-parallel
Strand 5
A
394 404anti-parallel
Strand 6
A
407 417anti-parallel
Strand 7
A
302 312parallel
Strand 8
A
315 326anti-parallel
Strand 9
A
331 340anti-parallel
Strand 10
A
258 268anti-parallel
Strand 11
A
241 252anti-parallel
Strand 12
A
196 201anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
213 215anti-parallel
Strand 3
A
430 433anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il