Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZN9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZN9 entry

There are 6 chains in PDB entry 8ZN9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -34	GLY 365
B	GLY -34	GLU 364
C	GLN 2	GLU 399
D	GLN 2	GLU 364
E	LEU 3	GLU 364
F	LEU 3	GLU 364

There are108 helices in PDB entry 8ZN9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	23	Right-handed alpha
Helix 2	AA2	A	37	48	Right-handed alpha
Helix 3	AA3	A	56	64	Right-handed alpha
Helix 4	AA4	A	74	76	Right-handed 310
Helix 5	AA5	A	77	89	Right-handed alpha
Helix 6	AA6	A	102	104	Right-handed 310
Helix 7	AA7	A	105	116	Right-handed alpha
Helix 8	AA8	A	125	128	Right-handed 310
Helix 9	AA9	A	129	144	Right-handed alpha
Helix 10	AB1	A	161	167	Right-handed 310
Helix 11	AB2	A	168	173	Right-handed alpha
Helix 12	AB3	A	174	179	Right-handed alpha
Helix 13	AB4	A	180	192	Right-handed alpha
Helix 14	AB5	A	269	273	Right-handed 310
Helix 15	AB6	A	274	278	Right-handed 310
Helix 16	AB7	A	303	310	Right-handed alpha
Helix 17	AB8	A	314	328	Right-handed alpha
Helix 18	AB9	A	337	358	Right-handed alpha
Helix 19	AC1	B	12	23	Right-handed alpha
Helix 20	AC2	B	37	48	Right-handed alpha
Helix 21	AC3	B	56	64	Right-handed alpha
Helix 22	AC4	B	74	76	Right-handed 310
Helix 23	AC5	B	77	89	Right-handed alpha
Helix 24	AC6	B	102	104	Right-handed 310
Helix 25	AC7	B	105	116	Right-handed alpha
Helix 26	AC8	B	125	128	Right-handed 310
Helix 27	AC9	B	129	144	Right-handed alpha
Helix 28	AD1	B	161	167	Right-handed 310
Helix 29	AD2	B	168	173	Right-handed alpha
Helix 30	AD3	B	174	179	Right-handed alpha
Helix 31	AD4	B	180	192	Right-handed alpha
Helix 32	AD5	B	269	273	Right-handed 310
Helix 33	AD6	B	274	278	Right-handed 310
Helix 34	AD7	B	303	310	Right-handed alpha
Helix 35	AD8	B	314	328	Right-handed alpha
Helix 36	AD9	B	337	358	Right-handed alpha
Helix 37	AE1	C	12	23	Right-handed alpha
Helix 38	AE2	C	37	83	Right-handed alpha
Helix 39	AE3	C	91	99	Right-handed alpha
Helix 40	AE4	C	109	111	Right-handed 310
Helix 41	AE5	C	112	124	Right-handed alpha
Helix 42	AE6	C	137	139	Right-handed 310
Helix 43	AE7	C	140	151	Right-handed alpha
Helix 44	AE8	C	160	163	Right-handed 310
Helix 45	AE9	C	164	179	Right-handed alpha
Helix 46	AF1	C	196	202	Right-handed 310
Helix 47	AF2	C	203	208	Right-handed alpha
Helix 48	AF3	C	209	214	Right-handed alpha
Helix 49	AF4	C	215	227	Right-handed alpha
Helix 50	AF5	C	304	308	Right-handed 310
Helix 51	AF6	C	309	313	Right-handed 310
Helix 52	AF7	C	338	345	Right-handed alpha
Helix 53	AF8	C	349	363	Right-handed alpha
Helix 54	AF9	C	372	393	Right-handed alpha
Helix 55	AG1	D	12	23	Right-handed alpha
Helix 56	AG2	D	37	48	Right-handed alpha
Helix 57	AG3	D	56	64	Right-handed alpha
Helix 58	AG4	D	74	76	Right-handed 310
Helix 59	AG5	D	77	89	Right-handed alpha
Helix 60	AG6	D	102	104	Right-handed 310
Helix 61	AG7	D	105	116	Right-handed alpha
Helix 62	AG8	D	125	128	Right-handed 310
Helix 63	AG9	D	129	144	Right-handed alpha
Helix 64	AH1	D	161	167	Right-handed 310
Helix 65	AH2	D	168	173	Right-handed alpha
Helix 66	AH3	D	174	179	Right-handed alpha
Helix 67	AH4	D	180	192	Right-handed alpha
Helix 68	AH5	D	269	273	Right-handed 310
Helix 69	AH6	D	274	278	Right-handed 310
Helix 70	AH7	D	303	310	Right-handed alpha
Helix 71	AH8	D	314	328	Right-handed alpha
Helix 72	AH9	D	337	358	Right-handed alpha
Helix 73	AI1	E	12	23	Right-handed alpha
Helix 74	AI2	E	37	48	Right-handed alpha
Helix 75	AI3	E	56	64	Right-handed alpha
Helix 76	AI4	E	74	76	Right-handed 310
Helix 77	AI5	E	77	89	Right-handed alpha
Helix 78	AI6	E	102	104	Right-handed 310
Helix 79	AI7	E	105	116	Right-handed alpha
Helix 80	AI8	E	125	128	Right-handed 310
Helix 81	AI9	E	129	144	Right-handed alpha
Helix 82	AJ1	E	161	167	Right-handed 310
Helix 83	AJ2	E	168	173	Right-handed alpha
Helix 84	AJ3	E	174	179	Right-handed alpha
Helix 85	AJ4	E	180	192	Right-handed alpha
Helix 86	AJ5	E	269	273	Right-handed 310
Helix 87	AJ6	E	274	278	Right-handed 310
Helix 88	AJ7	E	303	310	Right-handed alpha
Helix 89	AJ8	E	314	328	Right-handed alpha
Helix 90	AJ9	E	337	358	Right-handed alpha
Helix 91	AK1	F	12	23	Right-handed alpha
Helix 92	AK2	F	37	48	Right-handed alpha
Helix 93	AK3	F	56	64	Right-handed alpha
Helix 94	AK4	F	74	76	Right-handed 310
Helix 95	AK5	F	77	89	Right-handed alpha
Helix 96	AK6	F	102	104	Right-handed 310
Helix 97	AK7	F	105	116	Right-handed alpha
Helix 98	AK8	F	125	128	Right-handed 310
Helix 99	AK9	F	129	144	Right-handed alpha
Helix 100	AL1	F	161	167	Right-handed 310
Helix 101	AL2	F	168	173	Right-handed alpha
Helix 102	AL3	F	174	179	Right-handed alpha
Helix 103	AL4	F	180	192	Right-handed alpha
Helix 104	AL5	F	269	273	Right-handed 310
Helix 105	AL6	F	274	278	Right-handed 310
Helix 106	AL7	F	303	310	Right-handed alpha
Helix 107	AL8	F	314	328	Right-handed alpha
Helix 108	AL9	F	337	358	Right-handed alpha

There are 14 sheets in PDB entry 8ZN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-31	-30	first strand
Strand 2	A	-27	-26	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	28	34	parallel
Strand 3	A	4	9	parallel
Strand 4	A	68	71	parallel
Strand 5	A	93	95	parallel
Strand 6	A	120	122	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	251	257	anti-parallel
Strand 5	A	148	154	anti-parallel
Strand 6	A	235	241	parallel
Strand 7	A	223	230	anti-parallel
Strand 8	A	195	203	anti-parallel
Strand 9	A	361	362	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-31	-30	first strand
Strand 2	B	-27	-26	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	28	34	parallel
Strand 3	B	4	9	parallel
Strand 4	B	68	71	parallel
Strand 5	B	93	95	parallel
Strand 6	B	120	122	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	260	266	anti-parallel
Strand 4	B	251	257	anti-parallel
Strand 5	B	148	154	anti-parallel
Strand 6	B	235	241	parallel
Strand 7	B	223	230	anti-parallel
Strand 8	B	195	203	anti-parallel
Strand 9	B	361	362	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	28	34	parallel
Strand 3	C	4	9	parallel
Strand 4	C	103	106	parallel
Strand 5	C	128	130	parallel
Strand 6	C	155	157	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	334	first strand
Strand 2	C	319	324	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	286	292	anti-parallel
Strand 5	C	183	189	anti-parallel
Strand 6	C	270	276	parallel
Strand 7	C	258	265	anti-parallel
Strand 8	C	230	238	anti-parallel
Strand 9	C	396	397	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	28	34	parallel
Strand 3	D	4	9	parallel
Strand 4	D	68	71	parallel
Strand 5	D	93	96	parallel
Strand 6	D	120	123	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	299	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	260	266	anti-parallel
Strand 4	D	251	257	anti-parallel
Strand 5	D	148	154	anti-parallel
Strand 6	D	235	241	parallel
Strand 7	D	223	230	anti-parallel
Strand 8	D	195	203	anti-parallel
Strand 9	D	361	362	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	28	34	parallel
Strand 3	E	4	9	parallel
Strand 4	E	68	71	parallel
Strand 5	E	93	95	parallel
Strand 6	E	120	122	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	296	299	first strand
Strand 2	E	284	289	anti-parallel
Strand 3	E	260	266	anti-parallel
Strand 4	E	251	257	anti-parallel
Strand 5	E	148	154	anti-parallel
Strand 6	E	235	241	parallel
Strand 7	E	223	230	anti-parallel
Strand 8	E	195	203	anti-parallel
Strand 9	E	361	362	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	28	34	parallel
Strand 3	F	4	9	parallel
Strand 4	F	68	71	parallel
Strand 5	F	93	95	parallel
Strand 6	F	120	122	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	296	299	first strand
Strand 2	F	284	289	anti-parallel
Strand 3	F	260	266	anti-parallel
Strand 4	F	251	257	anti-parallel
Strand 5	F	148	154	anti-parallel
Strand 6	F	235	241	parallel
Strand 7	F	223	230	anti-parallel
Strand 8	F	195	203	anti-parallel
Strand 9	F	361	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZN9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZN9