Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZNJ entry

There are 4 chains in PDB entry 8ZNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 459
B
 VAL 2LYS 238
D
 U 1 A 21
E
 C 2 A 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8ZNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 27Right-handed 310
Helix 2
AA2
A
28 33Right-handed alpha
Helix 3
AA3
A
50 62Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
107 117Right-handed alpha
Helix 6
AA6
A
130 145Right-handed alpha
Helix 7
AA7
A
157 162Right-handed alpha
Helix 8
AA8
A
163 165Right-handed 310
Helix 9
AA9
A
167 171Right-handed 310
Helix 10
AB1
A
172 184Right-handed alpha
Helix 11
AB2
A
194 201Right-handed alpha
Helix 12
AB3
A
260 279Right-handed alpha
Helix 13
AB4
A
295 306Right-handed alpha
Helix 14
AB5
A
402 416Right-handed alpha
Helix 15
AB6
A
428 441Right-handed alpha
Helix 16
AB7
A
442 444Right-handed 310
Helix 17
AB8
A
454 459Right-handed 310
Helix 18
AB9
B
26 38Right-handed alpha
Helix 19
AC1
B
59 74Right-handed alpha
Helix 20
AC2
B
93 114Right-handed alpha
Helix 21
AC3
B
182 194Right-handed alpha
Helix 22
AC4
B
198 213Right-handed alpha
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There are 7 sheets in PDB entry 8ZNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
339 344anti-parallel
Strand 3
A
356 363anti-parallel
Strand 4
A
391 397anti-parallel
Strand 5
A
311 318anti-parallel
Strand 6
A
285 290parallel
Strand 7
A
208 215parallel
Strand 8
A
223 225anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
15 17anti-parallel
Strand 3
A
190 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
91 92parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
45 46parallel
Strand 3
A
124 129parallel
Strand 4
A
151 156parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
380 382anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
135 144anti-parallel
Strand 3
B
147 160anti-parallel
Strand 4
B
163 174anti-parallel
Strand 5
B
7 9anti-parallel
Strand 6
B
227 232anti-parallel
Strand 7
B
217 221anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
50 55anti-parallel
Strand 3
B
17 23anti-parallel
Strand 4
B
86 88anti-parallel
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