Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZNM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZNM entry

There are 3 chains in PDB entry 8ZNM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 13	LYS 469
B	VAL 14	LYS 469
C	VAL 14	GLY 404

There are 89 helices in PDB entry 8ZNM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	41	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	89	102	Right-handed alpha
Helix 4	AA4	A	104	111	Right-handed alpha
Helix 5	AA5	A	125	137	Right-handed alpha
Helix 6	AA6	A	147	162	Right-handed alpha
Helix 7	AA7	A	186	188	Right-handed 310
Helix 8	AA8	A	189	194	Right-handed 310
Helix 9	AA9	A	197	207	Right-handed alpha
Helix 10	AB1	A	208	213	Right-handed 310
Helix 11	AB2	A	221	234	Right-handed alpha
Helix 12	AB3	A	253	257	Right-handed 310
Helix 13	AB4	A	263	270	Right-handed alpha
Helix 14	AB5	A	289	304	Right-handed alpha
Helix 15	AB6	A	329	339	Right-handed alpha
Helix 16	AB7	A	350	356	Right-handed alpha
Helix 17	AB8	A	368	379	Right-handed alpha
Helix 18	AB9	A	390	402	Right-handed alpha
Helix 19	AC1	A	408	411	Right-handed 310
Helix 20	AC2	A	419	433	Right-handed alpha
Helix 21	AC3	A	433	451	Right-handed alpha
Helix 22	AC4	A	455	466	Right-handed alpha
Helix 23	AC5	B	24	41	Right-handed alpha
Helix 24	AC6	B	55	69	Right-handed alpha
Helix 25	AC7	B	89	102	Right-handed alpha
Helix 26	AC8	B	104	111	Right-handed alpha
Helix 27	AC9	B	125	137	Right-handed alpha
Helix 28	AD1	B	147	162	Right-handed alpha
Helix 29	AD2	B	186	188	Right-handed 310
Helix 30	AD3	B	189	194	Right-handed 310
Helix 31	AD4	B	197	207	Right-handed alpha
Helix 32	AD5	B	208	213	Right-handed 310
Helix 33	AD6	B	221	234	Right-handed alpha
Helix 34	AD7	B	253	257	Right-handed 310
Helix 35	AD8	B	263	270	Right-handed alpha
Helix 36	AD9	B	289	304	Right-handed alpha
Helix 37	AE1	B	323	328	Right-handed alpha
Helix 38	AE2	B	329	340	Right-handed alpha
Helix 39	AE3	B	350	356	Right-handed alpha
Helix 40	AE4	B	368	379	Right-handed alpha
Helix 41	AE5	B	390	402	Right-handed alpha
Helix 42	AE6	B	419	433	Right-handed alpha
Helix 43	AE7	B	433	451	Right-handed alpha
Helix 44	AE8	B	455	469	Right-handed alpha
Helix 45	AE9	C	24	41	Right-handed alpha
Helix 46	AF1	C	55	69	Right-handed alpha
Helix 47	AF2	C	89	101	Right-handed alpha
Helix 48	AF3	C	104	112	Right-handed alpha
Helix 49	AF4	C	125	137	Right-handed alpha
Helix 50	AF5	C	147	162	Right-handed alpha
Helix 51	AF6	C	186	188	Right-handed 310
Helix 52	AF7	C	189	194	Right-handed 310
Helix 53	AF8	C	197	207	Right-handed alpha
Helix 54	AF9	C	208	213	Right-handed 310
Helix 55	AG1	C	221	234	Right-handed alpha
Helix 56	AG2	C	253	257	Right-handed 310
Helix 57	AG3	C	263	270	Right-handed alpha
Helix 58	AG4	C	289	304	Right-handed alpha
Helix 59	AG5	C	329	338	Right-handed alpha
Helix 60	AG6	C	350	356	Right-handed alpha
Helix 61	AG7	C	368	379	Right-handed alpha
Helix 62	AG8	C	390	402	Right-handed alpha
Helix 63	AG9	C	408	411	Right-handed 310
Helix 64	AH1	C	419	432	Right-handed alpha
Helix 65	AH2	C	433	451	Right-handed alpha
Helix 66	AH3	C	455	469	Right-handed alpha
Helix 67	AH4	D	24	41	Right-handed alpha
Helix 68	AH5	D	55	69	Right-handed alpha
Helix 69	AH6	D	89	101	Right-handed alpha
Helix 70	AH7	D	104	111	Right-handed alpha
Helix 71	AH8	D	125	137	Right-handed alpha
Helix 72	AH9	D	147	163	Right-handed alpha
Helix 73	AI1	D	186	188	Right-handed 310
Helix 74	AI2	D	189	194	Right-handed 310
Helix 75	AI3	D	197	207	Right-handed alpha
Helix 76	AI4	D	208	213	Right-handed 310
Helix 77	AI5	D	221	234	Right-handed alpha
Helix 78	AI6	D	253	257	Right-handed 310
Helix 79	AI7	D	263	270	Right-handed alpha
Helix 80	AI8	D	289	304	Right-handed alpha
Helix 81	AI9	D	323	329	Right-handed alpha
Helix 82	AJ1	D	329	340	Right-handed alpha
Helix 83	AJ2	D	350	356	Right-handed alpha
Helix 84	AJ3	D	368	378	Right-handed alpha
Helix 85	AJ4	D	390	402	Right-handed alpha
Helix 86	AJ5	D	408	411	Right-handed 310
Helix 87	AJ6	D	419	433	Right-handed alpha
Helix 88	AJ7	D	433	451	Right-handed alpha
Helix 89	AJ8	D	455	469	Right-handed alpha

There are 12 sheets in PDB entry 8ZNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	44	51	parallel
Strand 3	A	16	20	parallel
Strand 4	A	118	122	parallel
Strand 5	A	140	144	parallel
Strand 6	A	216	218	parallel
Strand 7	A	244	246	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	183	184	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	306	310	parallel
Strand 3	A	277	281	parallel
Strand 4	A	360	365	parallel
Strand 5	A	382	384	parallel
Strand 6	A	404	406	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	44	51	parallel
Strand 3	B	16	20	parallel
Strand 4	B	118	122	parallel
Strand 5	B	140	144	parallel
Strand 6	B	215	218	parallel
Strand 7	B	244	246	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	183	184	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	306	311	parallel
Strand 3	B	277	281	parallel
Strand 4	B	360	365	parallel
Strand 5	B	382	384	parallel
Strand 6	B	404	406	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	78	first strand
Strand 2	C	44	51	parallel
Strand 3	C	16	20	parallel
Strand 4	C	118	122	parallel
Strand 5	C	140	144	parallel
Strand 6	C	215	218	parallel
Strand 7	C	244	246	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	183	184	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	345	first strand
Strand 2	C	306	310	parallel
Strand 3	C	277	281	parallel
Strand 4	C	360	365	parallel
Strand 5	C	382	384	parallel
Strand 6	C	404	406	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	78	first strand
Strand 2	D	44	51	parallel
Strand 3	D	16	20	parallel
Strand 4	D	118	122	parallel
Strand 5	D	140	144	parallel
Strand 6	D	216	218	parallel
Strand 7	D	244	246	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	182	184	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	342	346	first strand
Strand 2	D	306	311	parallel
Strand 3	D	277	281	parallel
Strand 4	D	360	365	parallel
Strand 5	D	382	384	parallel
Strand 6	D	404	406	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZNM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZNM