Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZNW entry

There is 1 chain in PDB entry 8ZNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8ARG 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8ZNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
36 43Right-handed alpha
Helix 3
AA3
A
59 75Right-handed alpha
Helix 4
AA4
A
84 89Right-handed alpha
Helix 5
AA5
A
97 114Right-handed alpha
Helix 6
AA6
A
128 134Right-handed alpha
Helix 7
AA7
A
135 139Right-handed 310
Helix 8
AA8
A
140 158Right-handed alpha
Helix 9
AA9
A
169 178Right-handed alpha
Helix 10
AB1
A
189 192Right-handed 310
Helix 11
AB2
A
193 214Right-handed alpha
Helix 12
AB3
A
234 249Right-handed alpha
Helix 13
AB4
A
249 259Right-handed alpha
Helix 14
AB5
A
265 269Right-handed 310
Helix 15
AB6
A
272 281Right-handed alpha
Helix 16
AB7
A
327 341Right-handed alpha
Helix 17
AB8
A
368 387Right-handed alpha
Helix 18
AB9
A
405 409Right-handed 310
Helix 19
AC1
A
429 443Right-handed alpha
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There are 3 sheets in PDB entry 8ZNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
163 167parallel
Strand 3
A
117 123parallel
Strand 4
A
78 82parallel
Strand 5
A
14 18parallel
Strand 6
A
392 398parallel
Strand 7
A
347 352parallel
Strand 8
A
287 290parallel
Strand 9
A
223 224parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
295 298parallel
Strand 3
A
309 311anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
426 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il