Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZNZ entry

There are 10 chains in PDB entry 8ZNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 26	SER 549
E	ASP 1	LEU 104
F	GLN 1	SER 124
I	GLN 1	VAL 117
J	ILE 2	LEU 104
B	ALA 26	SER 549
C	ASP 1	LEU 104
D	GLN 1	SER 124
G	GLN 1	VAL 117
H	ILE 2	LEU 104

There are 44 helices in PDB entry 8ZNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	60	75	Right-handed alpha
Helix 2	AA2	A	91	96	Right-handed alpha
Helix 3	AA3	A	98	109	Right-handed alpha
Helix 4	AA4	A	123	129	Right-handed alpha
Helix 5	AA5	A	129	135	Right-handed alpha
Helix 6	AA6	A	149	154	Right-handed alpha
Helix 7	AA7	A	180	185	Right-handed alpha
Helix 8	AA8	A	195	210	Right-handed alpha
Helix 9	AA9	A	223	233	Right-handed alpha
Helix 10	AB1	A	317	328	Right-handed alpha
Helix 11	AB2	A	328	335	Right-handed alpha
Helix 12	AB3	A	358	372	Right-handed alpha
Helix 13	AB4	A	392	394	Right-handed 310
Helix 14	AB5	A	407	413	Right-handed alpha
Helix 15	AB6	A	429	438	Right-handed alpha
Helix 16	AB7	A	499	503	Right-handed alpha
Helix 17	AB8	A	504	507	Right-handed 310
Helix 18	AB9	A	508	514	Right-handed alpha
Helix 19	AC1	A	523	536	Right-handed alpha
Helix 20	AC2	F	28	32	Right-handed 310
Helix 21	AC3	I	28	32	Right-handed 310
Helix 22	AC4	I	87	91	Right-handed 310
Helix 23	AC5	B	60	75	Right-handed alpha
Helix 24	AC6	B	91	96	Right-handed alpha
Helix 25	AC7	B	98	109	Right-handed alpha
Helix 26	AC8	B	123	129	Right-handed alpha
Helix 27	AC9	B	129	135	Right-handed alpha
Helix 28	AD1	B	149	154	Right-handed alpha
Helix 29	AD2	B	180	185	Right-handed alpha
Helix 30	AD3	B	195	210	Right-handed alpha
Helix 31	AD4	B	223	233	Right-handed alpha
Helix 32	AD5	B	317	328	Right-handed alpha
Helix 33	AD6	B	328	335	Right-handed alpha
Helix 34	AD7	B	358	372	Right-handed alpha
Helix 35	AD8	B	392	394	Right-handed 310
Helix 36	AD9	B	407	413	Right-handed alpha
Helix 37	AE1	B	429	438	Right-handed alpha
Helix 38	AE2	B	499	503	Right-handed alpha
Helix 39	AE3	B	504	507	Right-handed 310
Helix 40	AE4	B	508	514	Right-handed alpha
Helix 41	AE5	B	523	536	Right-handed alpha
Helix 42	AE6	D	28	32	Right-handed 310
Helix 43	AE7	G	28	32	Right-handed 310
Helix 44	AE8	G	87	91	Right-handed 310

There are 32 sheets in PDB entry 8ZNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	82	first strand
Strand 2	A	28	34	parallel
Strand 3	A	290	293	anti-parallel
Strand 4	A	302	305	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	191	193	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	169	177	anti-parallel
Strand 3	A	215	220	parallel
Strand 4	A	238	240	parallel
Strand 5	A	274	278	parallel
Strand 6	A	265	268	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	308	309	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	390	first strand
Strand 2	A	450	453	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	498	first strand
Strand 2	A	421	426	anti-parallel
Strand 3	A	518	519	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	469	475	anti-parallel
Strand 3	A	455	459	anti-parallel
Strand 4	A	546	548	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	24	first strand
Strand 2	E	70	76	anti-parallel
Strand 3	E	62	67	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	54	first strand
Strand 2	E	45	49	anti-parallel
Strand 3	E	35	38	anti-parallel
Strand 4	E	85	88	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	119	123	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	3	first strand
Strand 2	I	21	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	60	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	93	101	anti-parallel
Strand 5	I	106	108	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	60	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	93	101	anti-parallel
Strand 5	I	115	116	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	19	29	anti-parallel
Strand 3	J	68	75	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	54	first strand
Strand 2	J	45	49	anti-parallel
Strand 3	J	33	38	anti-parallel
Strand 4	J	85	90	anti-parallel
Strand 5	J	102	103	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	28	34	parallel
Strand 3	B	290	293	anti-parallel
Strand 4	B	302	305	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	191	193	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	169	177	anti-parallel
Strand 3	B	215	220	parallel
Strand 4	B	238	240	parallel
Strand 5	B	274	278	parallel
Strand 6	B	265	268	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	308	309	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	450	453	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	498	first strand
Strand 2	B	421	426	anti-parallel
Strand 3	B	518	519	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	B	469	475	anti-parallel
Strand 3	B	455	459	anti-parallel
Strand 4	B	546	548	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	24	first strand
Strand 2	C	70	76	anti-parallel
Strand 3	C	62	67	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	35	38	anti-parallel
Strand 4	C	85	88	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	119	123	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	3	first strand
Strand 2	G	21	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	72	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	60	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	93	101	anti-parallel
Strand 5	G	106	108	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	60	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	93	101	anti-parallel
Strand 5	G	115	116	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	19	29	anti-parallel
Strand 3	H	68	75	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	54	first strand
Strand 2	H	45	49	anti-parallel
Strand 3	H	33	38	anti-parallel
Strand 4	H	85	90	anti-parallel
Strand 5	H	102	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZNZ