Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZOO entry

There are 2 chains in PDB entry 8ZOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ALA 417
B
 LEU 2ALA 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8ZOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
38 57Right-handed alpha
Helix 4
AA4
A
59 67Right-handed alpha
Helix 5
AA5
A
69 85Right-handed alpha
Helix 6
AA6
A
122 137Right-handed alpha
Helix 7
AA7
A
148 166Right-handed alpha
Helix 8
AA8
A
169 171Right-handed 310
Helix 9
AA9
A
180 189Right-handed alpha
Helix 10
AB1
A
206 213Right-handed alpha
Helix 11
AB2
A
234 248Right-handed alpha
Helix 12
AB3
A
263 281Right-handed alpha
Helix 13
AB4
A
287 295Right-handed alpha
Helix 14
AB5
A
305 311Right-handed 310
Helix 15
AB6
A
325 337Right-handed alpha
Helix 16
AB7
A
348 359Right-handed alpha
Helix 17
AB8
A
370 373Right-handed 310
Helix 18
AB9
A
399 401Right-handed 310
Helix 19
AC1
B
3 18Right-handed alpha
Helix 20
AC2
B
20 38Right-handed alpha
Helix 21
AC3
B
38 56Right-handed alpha
Helix 22
AC4
B
59 67Right-handed alpha
Helix 23
AC5
B
69 85Right-handed alpha
Helix 24
AC6
B
123 137Right-handed alpha
Helix 25
AC7
B
149 167Right-handed alpha
Helix 26
AC8
B
169 171Right-handed 310
Helix 27
AC9
B
180 190Right-handed alpha
Helix 28
AD1
B
202 212Right-handed alpha
Helix 29
AD2
B
234 248Right-handed alpha
Helix 30
AD3
B
263 281Right-handed alpha
Helix 31
AD4
B
287 296Right-handed alpha
Helix 32
AD5
B
305 311Right-handed 310
Helix 33
AD6
B
325 337Right-handed alpha
Helix 34
AD7
B
348 359Right-handed alpha
Helix 35
AD8
B
370 373Right-handed 310
Helix 36
AD9
B
399 401Right-handed 310
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There are 6 sheets in PDB entry 8ZOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
104 111anti-parallel
Strand 3
A
403 414anti-parallel
Strand 4
B
363 368parallel
Strand 5
B
342 345parallel
Strand 6
B
225 229parallel
Strand 7
B
256 262parallel
Strand 8
B
317 323parallel
Strand 9
B
283 286parallel
Strand 10
B
301 303parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
139 143parallel
Strand 3
A
114 118parallel
Strand 4
A
196 199parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
283 286parallel
Strand 3
A
317 323parallel
Strand 4
A
256 262parallel
Strand 5
A
225 229parallel
Strand 6
A
342 345parallel
Strand 7
A
363 368parallel
Strand 8
B
403 414parallel
Strand 9
B
104 111anti-parallel
Strand 10
B
93 98anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
395 396anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
139 143parallel
Strand 3
B
114 118parallel
Strand 4
B
196 199parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
395 396anti-parallel
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