Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZOP entry

There is 1 chain in PDB entry 8ZOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1PRO 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8ZOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
52 54Right-handed 310
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
64 72Right-handed alpha
Helix 5
AA5
A
96 102Right-handed 310
Helix 6
AA6
A
110 125Right-handed alpha
Helix 7
AA7
A
170 173Right-handed 310
Helix 8
AA8
A
174 180Right-handed alpha
Helix 9
AA9
A
205 211Right-handed 310
Helix 10
AB1
A
240 247Right-handed alpha
Helix 11
AB2
A
249 261Right-handed alpha
Helix 12
AB3
A
262 268Right-handed alpha
Helix 13
AB4
A
299 301Right-handed 310
Helix 14
AB5
A
311 333Right-handed alpha
Helix 15
AB6
A
336 363Right-handed alpha
Helix 16
AB7
A
368 381Right-handed alpha
Helix 17
AB8
A
387 397Right-handed alpha
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There are 6 sheets in PDB entry 8ZOP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
34 38parallel
Strand 3
A
8 14parallel
Strand 4
A
159 168parallel
Strand 5
A
144 152anti-parallel
Strand 6
A
133 141anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
34 38parallel
Strand 3
A
8 14parallel
Strand 4
A
159 168parallel
Strand 5
A
295 297parallel
Strand 6
A
291 292anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
106 108anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
212 217parallel
Strand 4
A
220 226anti-parallel
Strand 5
A
231 239anti-parallel
Strand 6
A
191 199anti-parallel
Strand 7
A
272 273anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
212 217parallel
Strand 4
A
220 226anti-parallel
Strand 5
A
231 239anti-parallel
Strand 6
A
191 199anti-parallel
Strand 7
A
278 281anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
285 287anti-parallel
Strand 3
A
303 304anti-parallel
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