Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZP4 entry

There are 7 chains in PDB entry 8ZP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 355	LEU 914
B	SER 238	LEU 620
C	PHE 15	GLY 615
D	ASP 46	LEU 529
G	A 2	G 32
H	C 41	T 71
E	MET 1	HIS 478

There are118 helices in PDB entry 8ZP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	381	385	Right-handed 310
Helix 2	AA2	A	400	408	Right-handed alpha
Helix 3	AA3	A	421	430	Right-handed alpha
Helix 4	AA4	A	452	469	Right-handed alpha
Helix 5	AA5	A	484	502	Right-handed alpha
Helix 6	AA6	A	520	522	Right-handed 310
Helix 7	AA7	A	523	533	Right-handed alpha
Helix 8	AA8	A	538	552	Right-handed alpha
Helix 9	AA9	A	554	558	Right-handed 310
Helix 10	AB1	A	567	573	Right-handed alpha
Helix 11	AB2	A	577	585	Right-handed alpha
Helix 12	AB3	A	603	610	Right-handed alpha
Helix 13	AB4	A	610	617	Right-handed alpha
Helix 14	AB5	A	628	640	Right-handed alpha
Helix 15	AB6	A	685	698	Right-handed alpha
Helix 16	AB7	A	702	726	Right-handed alpha
Helix 17	AB8	A	774	787	Right-handed alpha
Helix 18	AB9	A	789	795	Right-handed alpha
Helix 19	AC1	A	798	816	Right-handed alpha
Helix 20	AC2	A	822	836	Right-handed alpha
Helix 21	AC3	A	841	851	Right-handed alpha
Helix 22	AC4	A	865	876	Right-handed alpha
Helix 23	AC5	A	897	908	Right-handed alpha
Helix 24	AC6	B	242	250	Right-handed alpha
Helix 25	AC7	B	270	283	Right-handed alpha
Helix 26	AC8	B	286	299	Right-handed alpha
Helix 27	AC9	B	300	309	Right-handed alpha
Helix 28	AD1	B	322	333	Right-handed alpha
Helix 29	AD2	B	333	343	Right-handed alpha
Helix 30	AD3	B	371	383	Right-handed alpha
Helix 31	AD4	B	389	394	Right-handed alpha
Helix 32	AD5	B	398	412	Right-handed alpha
Helix 33	AD6	B	434	446	Right-handed alpha
Helix 34	AD7	B	460	465	Right-handed 310
Helix 35	AD8	B	466	474	Right-handed alpha
Helix 36	AD9	B	488	493	Right-handed 310
Helix 37	AE1	B	506	516	Right-handed alpha
Helix 38	AE2	B	518	539	Right-handed alpha
Helix 39	AE3	B	549	553	Right-handed 310
Helix 40	AE4	B	556	566	Right-handed alpha
Helix 41	AE5	B	571	585	Right-handed alpha
Helix 42	AE6	B	605	616	Right-handed alpha
Helix 43	AE7	C	16	20	Right-handed 310
Helix 44	AE8	C	43	48	Right-handed alpha
Helix 45	AE9	C	50	93	Right-handed alpha
Helix 46	AF1	C	138	159	Right-handed alpha
Helix 47	AF2	C	185	190	Right-handed alpha
Helix 48	AF3	C	190	196	Right-handed alpha
Helix 49	AF4	C	212	225	Right-handed alpha
Helix 50	AF5	C	226	228	Right-handed 310
Helix 51	AF6	C	243	251	Right-handed alpha
Helix 52	AF7	C	252	261	Right-handed alpha
Helix 53	AF8	C	276	289	Right-handed alpha
Helix 54	AF9	C	295	308	Right-handed alpha
Helix 55	AG1	C	313	332	Right-handed alpha
Helix 56	AG2	C	333	338	Right-handed 310
Helix 57	AG3	C	339	346	Right-handed 310
Helix 58	AG4	C	347	355	Right-handed alpha
Helix 59	AG5	C	357	363	Right-handed alpha
Helix 60	AG6	C	390	394	Right-handed alpha
Helix 61	AG7	C	400	416	Right-handed alpha
Helix 62	AG8	C	423	434	Right-handed alpha
Helix 63	AG9	C	435	441	Right-handed alpha
Helix 64	AH1	C	473	480	Right-handed alpha
Helix 65	AH2	C	482	493	Right-handed alpha
Helix 66	AH3	C	494	497	Right-handed 310
Helix 67	AH4	C	512	517	Right-handed alpha
Helix 68	AH5	C	519	530	Right-handed alpha
Helix 69	AH6	C	537	548	Right-handed alpha
Helix 70	AH7	C	550	559	Right-handed alpha
Helix 71	AH8	C	564	571	Right-handed alpha
Helix 72	AH9	C	574	595	Right-handed alpha
Helix 73	AI1	D	47	62	Right-handed alpha
Helix 74	AI2	D	75	91	Right-handed alpha
Helix 75	AI3	D	108	121	Right-handed alpha
Helix 76	AI4	D	138	158	Right-handed alpha
Helix 77	AI5	D	176	189	Right-handed alpha
Helix 78	AI6	D	218	224	Right-handed alpha
Helix 79	AI7	D	228	241	Right-handed alpha
Helix 80	AI8	D	255	259	Right-handed 310
Helix 81	AI9	D	261	268	Right-handed alpha
Helix 82	AJ1	D	280	293	Right-handed alpha
Helix 83	AJ2	D	301	313	Right-handed alpha
Helix 84	AJ3	D	318	331	Right-handed alpha
Helix 85	AJ4	D	333	348	Right-handed alpha
Helix 86	AJ5	D	350	361	Right-handed alpha
Helix 87	AJ6	D	361	372	Right-handed alpha
Helix 88	AJ7	D	376	381	Right-handed alpha
Helix 89	AJ8	D	384	401	Right-handed alpha
Helix 90	AJ9	D	407	426	Right-handed alpha
Helix 91	AK1	D	452	466	Right-handed alpha
Helix 92	AK2	D	480	490	Right-handed alpha
Helix 93	AK3	D	492	497	Right-handed alpha
Helix 94	AK4	D	509	517	Right-handed alpha
Helix 95	AK5	E	11	22	Right-handed alpha
Helix 96	AK6	E	25	29	Right-handed 310
Helix 97	AK7	E	43	54	Right-handed alpha
Helix 98	AK8	E	69	89	Right-handed alpha
Helix 99	AK9	E	98	102	Right-handed 310
Helix 100	AL1	E	104	118	Right-handed alpha
Helix 101	AL2	E	134	138	Right-handed 310
Helix 102	AL3	E	145	152	Right-handed alpha
Helix 103	AL4	E	153	155	Right-handed 310
Helix 104	AL5	E	174	179	Right-handed alpha
Helix 105	AL6	E	180	183	Right-handed 310
Helix 106	AL7	E	193	211	Right-handed alpha
Helix 107	AL8	E	212	223	Right-handed alpha
Helix 108	AL9	E	228	252	Right-handed alpha
Helix 109	AM1	E	254	272	Right-handed alpha
Helix 110	AM2	E	274	279	Right-handed alpha
Helix 111	AM3	E	280	288	Right-handed alpha
Helix 112	AM4	E	325	340	Right-handed alpha
Helix 113	AM5	E	342	344	Right-handed 310
Helix 114	AM6	E	345	350	Right-handed alpha
Helix 115	AM7	E	372	376	Right-handed 310
Helix 116	AM8	E	382	394	Right-handed alpha
Helix 117	AM9	E	417	430	Right-handed alpha
Helix 118	AN1	E	455	467	Right-handed alpha

There are 12 sheets in PDB entry 8ZP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	512	first strand
Strand 2	A	560	565	parallel
Strand 3	A	593	599	parallel
Strand 4	A	473	479	parallel
Strand 5	A	620	624	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	677	683	anti-parallel
Strand 4	A	771	772	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	891	893	anti-parallel
Strand 3	A	880	881	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	479	first strand
Strand 2	B	314	317	parallel
Strand 3	B	450	456	parallel
Strand 4	B	420	425	parallel
Strand 5	B	360	364	parallel
Strand 6	C	23	25	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	598	601	anti-parallel
Strand 3	B	589	592	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	131	first strand
Strand 2	C	198	205	parallel
Strand 3	C	232	238	parallel
Strand 4	C	103	107	parallel
Strand 5	C	263	266	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	599	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	251	parallel
Strand 4	D	96	101	parallel
Strand 5	D	272	274	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	471	first strand
Strand 2	D	504	506	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	186	189	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	62	first strand
Strand 2	E	126	132	parallel
Strand 3	E	162	167	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZP4