Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZP5 entry

There are 8 chains in PDB entry 8ZP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	PHE 239	ASN 618
E	MET 1	GLU 479
F	SER 271	GLU 426
G	T 1	T 35
H	A 39	A 72
A	PRO 355	LEU 914
C	PHE 15	ILE 616
D	ASP 46	LEU 529

There are132 helices in PDB entry 8ZP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	242	250	Right-handed alpha
Helix 2	AA2	B	270	283	Right-handed alpha
Helix 3	AA3	B	286	298	Right-handed alpha
Helix 4	AA4	B	300	310	Right-handed alpha
Helix 5	AA5	B	322	333	Right-handed alpha
Helix 6	AA6	B	333	342	Right-handed alpha
Helix 7	AA7	B	371	383	Right-handed alpha
Helix 8	AA8	B	400	413	Right-handed alpha
Helix 9	AA9	B	434	447	Right-handed alpha
Helix 10	AB1	B	460	465	Right-handed 310
Helix 11	AB2	B	466	474	Right-handed alpha
Helix 12	AB3	B	488	493	Right-handed 310
Helix 13	AB4	B	506	516	Right-handed alpha
Helix 14	AB5	B	518	540	Right-handed alpha
Helix 15	AB6	B	556	566	Right-handed alpha
Helix 16	AB7	B	571	585	Right-handed alpha
Helix 17	AB8	B	605	616	Right-handed alpha
Helix 18	AB9	E	12	22	Right-handed alpha
Helix 19	AC1	E	25	29	Right-handed 310
Helix 20	AC2	E	42	54	Right-handed alpha
Helix 21	AC3	E	69	89	Right-handed alpha
Helix 22	AC4	E	98	102	Right-handed 310
Helix 23	AC5	E	104	117	Right-handed alpha
Helix 24	AC6	E	118	120	Right-handed 310
Helix 25	AC7	E	135	138	Right-handed 310
Helix 26	AC8	E	144	156	Right-handed alpha
Helix 27	AC9	E	172	177	Right-handed alpha
Helix 28	AD1	E	178	183	Right-handed 310
Helix 29	AD2	E	193	211	Right-handed alpha
Helix 30	AD3	E	212	222	Right-handed alpha
Helix 31	AD4	E	230	252	Right-handed alpha
Helix 32	AD5	E	254	272	Right-handed alpha
Helix 33	AD6	E	274	280	Right-handed alpha
Helix 34	AD7	E	280	287	Right-handed alpha
Helix 35	AD8	E	288	294	Right-handed alpha
Helix 36	AD9	E	325	341	Right-handed alpha
Helix 37	AE1	E	372	376	Right-handed 310
Helix 38	AE2	E	382	394	Right-handed alpha
Helix 39	AE3	E	417	430	Right-handed alpha
Helix 40	AE4	E	455	466	Right-handed alpha
Helix 41	AE5	E	469	475	Right-handed alpha
Helix 42	AE6	F	281	292	Right-handed alpha
Helix 43	AE7	F	295	309	Right-handed alpha
Helix 44	AE8	F	310	313	Right-handed 310
Helix 45	AE9	F	315	332	Right-handed alpha
Helix 46	AF1	F	332	339	Right-handed alpha
Helix 47	AF2	F	339	351	Right-handed alpha
Helix 48	AF3	F	359	373	Right-handed alpha
Helix 49	AF4	F	376	387	Right-handed alpha
Helix 50	AF5	F	393	403	Right-handed alpha
Helix 51	AF6	F	414	426	Right-handed alpha
Helix 52	AF7	A	374	378	Right-handed 310
Helix 53	AF8	A	381	385	Right-handed 310
Helix 54	AF9	A	402	409	Right-handed 310
Helix 55	AG1	A	421	430	Right-handed alpha
Helix 56	AG2	A	455	469	Right-handed alpha
Helix 57	AG3	A	484	502	Right-handed alpha
Helix 58	AG4	A	522	534	Right-handed alpha
Helix 59	AG5	A	538	553	Right-handed alpha
Helix 60	AG6	A	554	558	Right-handed 310
Helix 61	AG7	A	567	572	Right-handed alpha
Helix 62	AG8	A	576	585	Right-handed alpha
Helix 63	AG9	A	603	609	Right-handed alpha
Helix 64	AH1	A	610	618	Right-handed alpha
Helix 65	AH2	A	628	640	Right-handed alpha
Helix 66	AH3	A	685	700	Right-handed alpha
Helix 67	AH4	A	702	726	Right-handed alpha
Helix 68	AH5	A	774	787	Right-handed alpha
Helix 69	AH6	A	789	796	Right-handed alpha
Helix 70	AH7	A	798	816	Right-handed alpha
Helix 71	AH8	A	822	836	Right-handed alpha
Helix 72	AH9	A	839	851	Right-handed alpha
Helix 73	AI1	A	865	876	Right-handed alpha
Helix 74	AI2	A	897	908	Right-handed alpha
Helix 75	AI3	A	908	914	Right-handed alpha
Helix 76	AI4	C	50	92	Right-handed alpha
Helix 77	AI5	C	132	136	Right-handed 310
Helix 78	AI6	C	138	159	Right-handed alpha
Helix 79	AI7	C	184	190	Right-handed alpha
Helix 80	AI8	C	190	196	Right-handed alpha
Helix 81	AI9	C	212	225	Right-handed alpha
Helix 82	AJ1	C	226	229	Right-handed 310
Helix 83	AJ2	C	244	251	Right-handed alpha
Helix 84	AJ3	C	252	260	Right-handed alpha
Helix 85	AJ4	C	271	275	Right-handed 310
Helix 86	AJ5	C	276	288	Right-handed alpha
Helix 87	AJ6	C	295	308	Right-handed alpha
Helix 88	AJ7	C	313	332	Right-handed alpha
Helix 89	AJ8	C	333	338	Right-handed 310
Helix 90	AJ9	C	339	346	Right-handed 310
Helix 91	AK1	C	347	356	Right-handed alpha
Helix 92	AK2	C	357	371	Right-handed alpha
Helix 93	AK3	C	373	381	Right-handed alpha
Helix 94	AK4	C	384	395	Right-handed alpha
Helix 95	AK5	C	401	414	Right-handed alpha
Helix 96	AK6	C	423	434	Right-handed alpha
Helix 97	AK7	C	435	441	Right-handed alpha
Helix 98	AK8	C	449	454	Right-handed alpha
Helix 99	AK9	C	462	465	Right-handed 310
Helix 100	AL1	C	473	480	Right-handed alpha
Helix 101	AL2	C	482	493	Right-handed alpha
Helix 102	AL3	C	494	497	Right-handed 310
Helix 103	AL4	C	510	517	Right-handed alpha
Helix 104	AL5	C	519	531	Right-handed alpha
Helix 105	AL6	C	537	548	Right-handed alpha
Helix 106	AL7	C	550	558	Right-handed alpha
Helix 107	AL8	C	563	572	Right-handed alpha
Helix 108	AL9	C	574	594	Right-handed alpha
Helix 109	AM1	D	47	61	Right-handed alpha
Helix 110	AM2	D	72	74	Right-handed 310
Helix 111	AM3	D	75	90	Right-handed alpha
Helix 112	AM4	D	107	121	Right-handed alpha
Helix 113	AM5	D	123	125	Right-handed 310
Helix 114	AM6	D	138	158	Right-handed alpha
Helix 115	AM7	D	176	189	Right-handed alpha
Helix 116	AM8	D	229	241	Right-handed alpha
Helix 117	AM9	D	255	260	Right-handed alpha
Helix 118	AN1	D	261	268	Right-handed alpha
Helix 119	AN2	D	280	293	Right-handed alpha
Helix 120	AN3	D	301	315	Right-handed alpha
Helix 121	AN4	D	318	331	Right-handed alpha
Helix 122	AN5	D	333	348	Right-handed alpha
Helix 123	AN6	D	350	361	Right-handed alpha
Helix 124	AN7	D	361	372	Right-handed alpha
Helix 125	AN8	D	375	381	Right-handed alpha
Helix 126	AN9	D	384	401	Right-handed alpha
Helix 127	AO1	D	407	426	Right-handed alpha
Helix 128	AO2	D	452	466	Right-handed alpha
Helix 129	AO3	D	480	490	Right-handed alpha
Helix 130	AO4	D	492	497	Right-handed alpha
Helix 131	AO5	D	509	517	Right-handed alpha
Helix 132	AO6	D	523	527	Right-handed 310

There are 14 sheets in PDB entry 8ZP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	313	317	parallel
Strand 3	B	450	456	parallel
Strand 4	B	420	425	parallel
Strand 5	B	360	364	parallel
Strand 6	C	23	25	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	598	601	anti-parallel
Strand 3	B	589	592	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	62	first strand
Strand 2	E	126	133	parallel
Strand 3	E	162	170	parallel
Strand 4	E	32	37	parallel
Strand 5	E	186	189	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	D	208	209	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	514	first strand
Strand 2	A	560	566	parallel
Strand 3	A	593	599	parallel
Strand 4	A	473	479	parallel
Strand 5	A	620	624	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	677	684	anti-parallel
Strand 4	A	771	773	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	891	894	anti-parallel
Strand 3	A	879	881	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	202	205	parallel
Strand 3	C	235	239	parallel
Strand 4	C	103	108	parallel
Strand 5	C	263	267	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	198	199	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	467	468	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	600	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	251	parallel
Strand 4	D	96	101	parallel
Strand 5	D	271	274	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	504	506	anti-parallel
Strand 3	D	469	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZP5