Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZP9 entry

There are 9 chains in PDB entry 8ZP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G -7	G 33
F	MET 1	SER 372
H	MET 1	TYR 375
I	MET 1	LYS 373
J	MET 1	ALA 374
K	MET 1	LYS 373
G	MET 1	GLY 362
B	PRO 4	ARG 377
M	G 20	T 52

There are 82 helices in PDB entry 8ZP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	38	48	Right-handed alpha
Helix 2	AA2	F	49	53	Right-handed 310
Helix 3	AA3	F	63	71	Right-handed alpha
Helix 4	AA4	F	78	89	Right-handed alpha
Helix 5	AA5	F	105	116	Right-handed alpha
Helix 6	AA6	F	122	136	Right-handed alpha
Helix 7	AA7	F	139	146	Right-handed alpha
Helix 8	AA8	F	223	231	Right-handed alpha
Helix 9	AA9	F	233	251	Right-handed alpha
Helix 10	AB1	F	279	285	Right-handed 310
Helix 11	AB2	F	295	313	Right-handed alpha
Helix 12	AB3	F	329	332	Right-handed 310
Helix 13	AB4	F	349	362	Right-handed alpha
Helix 14	AB5	H	38	48	Right-handed alpha
Helix 15	AB6	H	49	53	Right-handed 310
Helix 16	AB7	H	63	73	Right-handed alpha
Helix 17	AB8	H	77	89	Right-handed alpha
Helix 18	AB9	H	107	117	Right-handed alpha
Helix 19	AC1	H	122	135	Right-handed alpha
Helix 20	AC2	H	139	146	Right-handed alpha
Helix 21	AC3	H	223	230	Right-handed alpha
Helix 22	AC4	H	233	251	Right-handed alpha
Helix 23	AC5	H	280	285	Right-handed 310
Helix 24	AC6	H	295	316	Right-handed alpha
Helix 25	AC7	H	329	332	Right-handed 310
Helix 26	AC8	H	349	362	Right-handed alpha
Helix 27	AC9	H	365	371	Right-handed alpha
Helix 28	AD1	I	38	48	Right-handed alpha
Helix 29	AD2	I	52	56	Right-handed 310
Helix 30	AD3	I	63	70	Right-handed alpha
Helix 31	AD4	I	79	89	Right-handed alpha
Helix 32	AD5	I	106	117	Right-handed alpha
Helix 33	AD6	I	124	136	Right-handed alpha
Helix 34	AD7	I	139	146	Right-handed alpha
Helix 35	AD8	I	223	230	Right-handed alpha
Helix 36	AD9	I	233	251	Right-handed alpha
Helix 37	AE1	I	281	285	Right-handed 310
Helix 38	AE2	I	295	316	Right-handed alpha
Helix 39	AE3	I	329	332	Right-handed 310
Helix 40	AE4	I	349	361	Right-handed alpha
Helix 41	AE5	I	365	370	Right-handed alpha
Helix 42	AE6	J	38	48	Right-handed alpha
Helix 43	AE7	J	50	54	Right-handed 310
Helix 44	AE8	J	63	73	Right-handed alpha
Helix 45	AE9	J	77	89	Right-handed alpha
Helix 46	AF1	J	107	117	Right-handed alpha
Helix 47	AF2	J	121	134	Right-handed alpha
Helix 48	AF3	J	135	137	Right-handed 310
Helix 49	AF4	J	139	145	Right-handed alpha
Helix 50	AF5	J	223	230	Right-handed alpha
Helix 51	AF6	J	233	250	Right-handed alpha
Helix 52	AF7	J	280	285	Right-handed 310
Helix 53	AF8	J	295	315	Right-handed alpha
Helix 54	AF9	J	329	332	Right-handed 310
Helix 55	AG1	J	349	362	Right-handed alpha
Helix 56	AG2	J	367	372	Right-handed 310
Helix 57	AG3	K	12	16	Right-handed 310
Helix 58	AG4	K	38	48	Right-handed alpha
Helix 59	AG5	K	52	56	Right-handed 310
Helix 60	AG6	K	64	69	Right-handed alpha
Helix 61	AG7	K	78	89	Right-handed alpha
Helix 62	AG8	K	107	117	Right-handed alpha
Helix 63	AG9	K	121	133	Right-handed alpha
Helix 64	AH1	K	139	146	Right-handed alpha
Helix 65	AH2	K	223	230	Right-handed alpha
Helix 66	AH3	K	234	250	Right-handed alpha
Helix 67	AH4	K	280	285	Right-handed 310
Helix 68	AH5	K	296	316	Right-handed alpha
Helix 69	AH6	K	328	332	Right-handed 310
Helix 70	AH7	K	349	361	Right-handed alpha
Helix 71	AH8	G	38	47	Right-handed alpha
Helix 72	AH9	G	49	54	Right-handed alpha
Helix 73	AI1	G	223	229	Right-handed alpha
Helix 74	AI2	G	233	251	Right-handed alpha
Helix 75	AI3	G	279	285	Right-handed 310
Helix 76	AI4	G	295	310	Right-handed alpha
Helix 77	AI5	G	329	332	Right-handed 310
Helix 78	AI6	G	349	362	Right-handed alpha
Helix 79	AI7	B	36	49	Right-handed alpha
Helix 80	AI8	B	60	65	Right-handed alpha
Helix 81	AI9	B	144	157	Right-handed alpha
Helix 82	AJ1	B	185	193	Right-handed alpha

There are 23 sheets in PDB entry 8ZP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	176	178	anti-parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	171	173	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	176	178	anti-parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	2	10	anti-parallel
Strand 6	F	268	274	anti-parallel
Strand 7	F	323	327	anti-parallel
Strand 8	F	346	347	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	101	104	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	191	first strand
Strand 2	F	204	210	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	214	222	anti-parallel
Strand 5	H	171	173	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	214	222	anti-parallel
Strand 5	H	2	10	anti-parallel
Strand 6	H	268	274	anti-parallel
Strand 7	H	323	327	anti-parallel
Strand 8	H	345	347	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	101	104	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	191	first strand
Strand 2	H	204	210	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	214	222	anti-parallel
Strand 5	I	171	173	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	214	222	anti-parallel
Strand 5	I	2	10	anti-parallel
Strand 6	I	268	274	anti-parallel
Strand 7	I	324	327	anti-parallel
Strand 8	I	345	347	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	192	first strand
Strand 2	I	203	210	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	29	first strand
Strand 2	J	32	37	anti-parallel
Strand 3	J	176	178	anti-parallel
Strand 4	J	214	222	anti-parallel
Strand 5	J	171	173	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	29	first strand
Strand 2	J	32	37	anti-parallel
Strand 3	J	176	178	anti-parallel
Strand 4	J	214	222	anti-parallel
Strand 5	J	2	10	anti-parallel
Strand 6	J	268	274	anti-parallel
Strand 7	J	323	327	anti-parallel
Strand 8	J	345	347	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	190	first strand
Strand 2	J	205	210	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	171	173	first strand
Strand 2	K	213	222	anti-parallel
Strand 3	K	2	11	anti-parallel
Strand 4	K	268	274	anti-parallel
Strand 5	K	324	327	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	26	29	first strand
Strand 2	K	32	37	anti-parallel
Strand 3	K	176	177	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	60	61	first strand
Strand 2	K	101	102	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	147	148	first strand
Strand 2	K	166	167	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	171	173	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	2	10	anti-parallel
Strand 6	G	268	272	anti-parallel
Strand 7	G	324	327	anti-parallel
Strand 8	G	345	347	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	188	first strand
Strand 2	G	207	210	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	17	first strand
Strand 2	B	125	142	anti-parallel
Strand 3	B	77	85	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	125	142	parallel
Strand 3	B	67	74	anti-parallel
Strand 4	B	210	213	anti-parallel
Strand 5	B	241	249	anti-parallel
Strand 6	B	228	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZP9