Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZPB entry

There are 2 chains in PDB entry 8ZPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 54ILE 617
B
 VAL 2SER 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8ZPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 74Right-handed alpha
Helix 2
AA2
A
76 81Right-handed alpha
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
91 121Right-handed alpha
Helix 5
AA5
A
131 133Right-handed 310
Helix 6
AA6
A
134 166Right-handed alpha
Helix 7
AA7
A
208 217Right-handed alpha
Helix 8
AA8
A
220 224Right-handed 310
Helix 9
AA9
A
234 253Right-handed alpha
Helix 10
AB1
A
255 267Right-handed alpha
Helix 11
AB2
A
268 282Right-handed alpha
Helix 12
AB3
A
286 296Right-handed alpha
Helix 13
AB4
A
298 303Right-handed 310
Helix 14
AB5
A
304 320Right-handed alpha
Helix 15
AB6
A
324 331Right-handed alpha
Helix 16
AB7
A
338 372Right-handed alpha
Helix 17
AB8
A
375 379Right-handed 310
Helix 18
AB9
A
384 389Right-handed alpha
Helix 19
AC1
A
389 397Right-handed alpha
Helix 20
AC2
A
400 435Right-handed alpha
Helix 21
AC3
A
435 441Right-handed alpha
Helix 22
AC4
A
441 458Right-handed alpha
Helix 23
AC5
A
459 462Right-handed 310
Helix 24
AC6
A
464 476Right-handed alpha
Helix 25
AC7
A
478 494Right-handed alpha
Helix 26
AC8
A
497 510Right-handed alpha
Helix 27
AC9
A
514 523Right-handed alpha
Helix 28
AD1
A
523 539Right-handed alpha
Helix 29
AD2
A
551 567Right-handed alpha
Helix 30
AD3
A
567 580Right-handed alpha
Helix 31
AD4
A
583 593Right-handed alpha
Helix 32
AD5
A
594 597Right-handed 310
Helix 33
AD6
A
598 604Right-handed alpha
Helix 34
AD7
A
606 609Right-handed 310
Helix 35
AD8
A
610 615Right-handed alpha
Helix 36
AD9
B
28 32Right-handed 310
Helix 37
AE1
B
86 90Right-handed 310
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There are 5 sheets in PDB entry 8ZPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
B
105 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
548 549anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
114 119parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
114 119parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
109 110anti-parallel
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