Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZPC entry

There are 2 chains in PDB entry 8ZPC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 21	PRO 575
B	LEU 21	PRO 575

There are 43 helices in PDB entry 8ZPC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	55	Right-handed 310
Helix 2	AA2	A	57	70	Right-handed alpha
Helix 3	AA3	A	72	86	Right-handed alpha
Helix 4	AA4	A	99	108	Right-handed alpha
Helix 5	AA5	A	109	113	Right-handed 310
Helix 6	AA6	A	128	137	Right-handed alpha
Helix 7	AA7	A	143	148	Right-handed alpha
Helix 8	AA8	A	165	170	Right-handed alpha
Helix 9	AA9	A	170	176	Right-handed alpha
Helix 10	AB1	A	211	223	Right-handed alpha
Helix 11	AB2	A	249	254	Right-handed 310
Helix 12	AB3	A	258	267	Right-handed alpha
Helix 13	AB4	A	284	287	Right-handed 310
Helix 14	AB5	A	288	299	Right-handed alpha
Helix 15	AB6	A	335	343	Right-handed alpha
Helix 16	AB7	A	345	365	Right-handed alpha
Helix 17	AB8	A	366	368	Right-handed 310
Helix 18	AB9	A	387	395	Right-handed alpha
Helix 19	AC1	A	400	409	Right-handed alpha
Helix 20	AC2	A	417	430	Right-handed alpha
Helix 21	AC3	A	464	481	Right-handed alpha
Helix 22	AC4	A	549	566	Right-handed alpha
Helix 23	AC5	B	58	70	Right-handed alpha
Helix 24	AC6	B	72	83	Right-handed alpha
Helix 25	AC7	B	99	109	Right-handed alpha
Helix 26	AC8	B	110	113	Right-handed 310
Helix 27	AC9	B	128	137	Right-handed alpha
Helix 28	AD1	B	164	170	Right-handed alpha
Helix 29	AD2	B	170	175	Right-handed alpha
Helix 30	AD3	B	211	222	Right-handed alpha
Helix 31	AD4	B	250	255	Right-handed alpha
Helix 32	AD5	B	258	267	Right-handed alpha
Helix 33	AD6	B	284	287	Right-handed 310
Helix 34	AD7	B	288	299	Right-handed alpha
Helix 35	AD8	B	336	343	Right-handed alpha
Helix 36	AD9	B	344	356	Right-handed alpha
Helix 37	AE1	B	356	366	Right-handed alpha
Helix 38	AE2	B	387	396	Right-handed alpha
Helix 39	AE3	B	400	409	Right-handed alpha
Helix 40	AE4	B	417	430	Right-handed alpha
Helix 41	AE5	B	464	482	Right-handed alpha
Helix 42	AE6	B	551	566	Right-handed alpha
Helix 43	AE7	B	567	570	Right-handed 310

There are 15 sheets in PDB entry 8ZPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	179	180	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	125	first strand
Strand 2	A	38	49	anti-parallel
Strand 3	A	31	32	anti-parallel
Strand 4	A	205	208	parallel
Strand 5	A	440	444	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	141	first strand
Strand 2	A	160	164	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	245	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	538	544	anti-parallel
Strand 4	A	524	531	anti-parallel
Strand 5	A	495	501	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	332	334	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	315	first strand
Strand 2	A	322	324	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	434	first strand
Strand 2	A	457	459	anti-parallel
Strand 3	B	450	452	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	B	457	459	anti-parallel
Strand 3	B	433	434	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	179	180	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	125	first strand
Strand 2	B	38	49	anti-parallel
Strand 3	B	31	32	anti-parallel
Strand 4	B	205	208	parallel
Strand 5	B	440	444	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	160	162	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	201	202	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	245	first strand
Strand 2	B	227	232	anti-parallel
Strand 3	B	538	544	anti-parallel
Strand 4	B	524	531	anti-parallel
Strand 5	B	495	501	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	332	335	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	315	first strand
Strand 2	B	322	324	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZPC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPC