Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZPF entry

There are 4 chains in PDB entry 8ZPF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 386
B	MET 1	LYS 386
C	MET 1	LYS 386
D	MET 1	LYS 386

There are 71 helices in PDB entry 8ZPF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	26	Right-handed alpha
Helix 2	AA2	A	38	44	Right-handed alpha
Helix 3	AA3	A	46	56	Right-handed alpha
Helix 4	AA4	A	66	76	Right-handed alpha
Helix 5	AA5	A	89	91	Right-handed 310
Helix 6	AA6	A	92	100	Right-handed alpha
Helix 7	AA7	A	107	120	Right-handed alpha
Helix 8	AA8	A	144	157	Right-handed alpha
Helix 9	AA9	A	178	197	Right-handed alpha
Helix 10	AB1	A	209	216	Right-handed alpha
Helix 11	AB2	A	217	220	Right-handed 310
Helix 12	AB3	A	227	232	Right-handed 310
Helix 13	AB4	A	236	243	Right-handed alpha
Helix 14	AB5	A	271	275	Right-handed 310
Helix 15	AB6	A	290	294	Right-handed 310
Helix 16	AB7	A	296	300	Right-handed 310
Helix 17	AB8	A	351	359	Right-handed alpha
Helix 18	AB9	A	362	369	Right-handed alpha
Helix 19	AC1	B	14	28	Right-handed alpha
Helix 20	AC2	B	38	44	Right-handed alpha
Helix 21	AC3	B	46	57	Right-handed alpha
Helix 22	AC4	B	66	75	Right-handed alpha
Helix 23	AC5	B	89	91	Right-handed 310
Helix 24	AC6	B	92	99	Right-handed alpha
Helix 25	AC7	B	107	120	Right-handed alpha
Helix 26	AC8	B	144	157	Right-handed alpha
Helix 27	AC9	B	178	197	Right-handed alpha
Helix 28	AD1	B	209	216	Right-handed alpha
Helix 29	AD2	B	217	220	Right-handed 310
Helix 30	AD3	B	227	232	Right-handed 310
Helix 31	AD4	B	236	242	Right-handed alpha
Helix 32	AD5	B	271	275	Right-handed 310
Helix 33	AD6	B	296	300	Right-handed 310
Helix 34	AD7	B	351	359	Right-handed alpha
Helix 35	AD8	B	362	369	Right-handed alpha
Helix 36	AD9	C	14	28	Right-handed alpha
Helix 37	AE1	C	38	44	Right-handed alpha
Helix 38	AE2	C	46	57	Right-handed alpha
Helix 39	AE3	C	66	76	Right-handed alpha
Helix 40	AE4	C	89	91	Right-handed 310
Helix 41	AE5	C	92	99	Right-handed alpha
Helix 42	AE6	C	107	121	Right-handed alpha
Helix 43	AE7	C	145	156	Right-handed alpha
Helix 44	AE8	C	178	197	Right-handed alpha
Helix 45	AE9	C	209	216	Right-handed alpha
Helix 46	AF1	C	217	220	Right-handed 310
Helix 47	AF2	C	227	232	Right-handed 310
Helix 48	AF3	C	236	242	Right-handed alpha
Helix 49	AF4	C	271	275	Right-handed 310
Helix 50	AF5	C	290	294	Right-handed 310
Helix 51	AF6	C	296	300	Right-handed 310
Helix 52	AF7	C	351	360	Right-handed alpha
Helix 53	AF8	C	362	369	Right-handed alpha
Helix 54	AF9	D	14	28	Right-handed alpha
Helix 55	AG1	D	38	44	Right-handed alpha
Helix 56	AG2	D	46	57	Right-handed alpha
Helix 57	AG3	D	66	76	Right-handed alpha
Helix 58	AG4	D	89	91	Right-handed 310
Helix 59	AG5	D	92	99	Right-handed alpha
Helix 60	AG6	D	107	120	Right-handed alpha
Helix 61	AG7	D	144	157	Right-handed alpha
Helix 62	AG8	D	178	198	Right-handed alpha
Helix 63	AG9	D	209	216	Right-handed alpha
Helix 64	AH1	D	217	220	Right-handed 310
Helix 65	AH2	D	227	232	Right-handed 310
Helix 66	AH3	D	236	242	Right-handed alpha
Helix 67	AH4	D	271	275	Right-handed 310
Helix 68	AH5	D	290	294	Right-handed 310
Helix 69	AH6	D	296	300	Right-handed 310
Helix 70	AH7	D	351	360	Right-handed alpha
Helix 71	AH8	D	362	369	Right-handed alpha

There are 16 sheets in PDB entry 8ZPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	338	344	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	8	13	anti-parallel
Strand 5	A	376	380	parallel
Strand 6	A	383	385	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	61	64	parallel
Strand 3	A	82	84	parallel
Strand 4	A	102	105	parallel
Strand 5	A	127	132	parallel
Strand 6	A	161	167	parallel
Strand 7	A	204	208	parallel
Strand 8	A	223	226	parallel
Strand 9	A	33	37	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	323	328	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	311	313	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	313	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	338	345	anti-parallel
Strand 4	B	348	350	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	313	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	338	345	anti-parallel
Strand 4	B	251	256	anti-parallel
Strand 5	B	8	13	anti-parallel
Strand 6	B	376	379	parallel
Strand 7	B	384	385	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	61	64	parallel
Strand 3	B	82	84	parallel
Strand 4	B	102	105	parallel
Strand 5	B	127	132	parallel
Strand 6	B	161	167	parallel
Strand 7	B	205	208	parallel
Strand 8	B	223	226	parallel
Strand 9	B	33	37	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	323	329	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	350	first strand
Strand 2	C	338	345	anti-parallel
Strand 3	C	251	256	anti-parallel
Strand 4	C	8	13	anti-parallel
Strand 5	C	376	380	parallel
Strand 6	C	383	385	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	61	64	parallel
Strand 3	C	33	37	parallel
Strand 4	C	223	226	parallel
Strand 5	C	204	208	parallel
Strand 6	C	161	167	parallel
Strand 7	C	127	132	parallel
Strand 8	C	103	105	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	262	first strand
Strand 2	C	282	287	anti-parallel
Strand 3	C	323	329	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	310	313	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	350	first strand
Strand 2	D	338	345	anti-parallel
Strand 3	D	251	256	anti-parallel
Strand 4	D	8	13	anti-parallel
Strand 5	D	376	380	parallel
Strand 6	D	383	385	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	61	64	parallel
Strand 3	D	82	84	parallel
Strand 4	D	102	105	parallel
Strand 5	D	127	132	parallel
Strand 6	D	161	167	parallel
Strand 7	D	204	208	parallel
Strand 8	D	223	226	parallel
Strand 9	D	33	37	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	262	first strand
Strand 2	D	282	287	anti-parallel
Strand 3	D	323	329	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	307	first strand
Strand 2	D	310	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZPF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPF