Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZPI entry

There are 2 chains in PDB entry 8ZPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 481
B
 MET 1SER 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8ZPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 39Right-handed alpha
Helix 2
AA2
A
63 77Right-handed alpha
Helix 3
AA3
A
95 109Right-handed alpha
Helix 4
AA4
A
120 137Right-handed alpha
Helix 5
AA5
A
149 167Right-handed alpha
Helix 6
AA6
A
190 199Right-handed alpha
Helix 7
AA7
A
202 204Right-handed 310
Helix 8
AA8
A
218 232Right-handed alpha
Helix 9
AA9
A
253 265Right-handed alpha
Helix 10
AB1
A
274 281Right-handed 310
Helix 11
AB2
A
284 289Right-handed 310
Helix 12
AB3
A
290 294Right-handed 310
Helix 13
AB4
A
300 305Right-handed alpha
Helix 14
AB5
A
318 326Right-handed alpha
Helix 15
AB6
A
353 365Right-handed alpha
Helix 16
AB7
A
365 388Right-handed alpha
Helix 17
AB8
A
414 434Right-handed alpha
Helix 18
AB9
A
458 476Right-handed alpha
Helix 19
AC1
A
476 481Right-handed alpha
Helix 20
AC2
B
18 39Right-handed alpha
Helix 21
AC3
B
63 77Right-handed alpha
Helix 22
AC4
B
95 109Right-handed alpha
Helix 23
AC5
B
120 137Right-handed alpha
Helix 24
AC6
B
149 167Right-handed alpha
Helix 25
AC7
B
190 199Right-handed alpha
Helix 26
AC8
B
202 204Right-handed 310
Helix 27
AC9
B
218 232Right-handed alpha
Helix 28
AD1
B
253 265Right-handed alpha
Helix 29
AD2
B
274 281Right-handed 310
Helix 30
AD3
B
284 289Right-handed 310
Helix 31
AD4
B
290 294Right-handed 310
Helix 32
AD5
B
300 305Right-handed alpha
Helix 33
AD6
B
318 326Right-handed alpha
Helix 34
AD7
B
353 365Right-handed alpha
Helix 35
AD8
B
365 388Right-handed alpha
Helix 36
AD9
B
414 434Right-handed alpha
Helix 37
AE1
B
458 476Right-handed alpha
Helix 38
AE2
B
476 481Right-handed alpha
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There are 6 sheets in PDB entry 8ZPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
296 299anti-parallel
Strand 4
A
267 271parallel
Strand 5
A
235 242parallel
Strand 6
A
180 185parallel
Strand 7
A
206 209parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
448 451anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
445 446anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
312 316anti-parallel
Strand 3
B
296 299anti-parallel
Strand 4
B
267 272parallel
Strand 5
B
235 242parallel
Strand 6
B
180 185parallel
Strand 7
B
206 209parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 395first strand
Strand 2
B
403 408anti-parallel
Strand 3
B
448 451anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 442first strand
Strand 2
B
445 446anti-parallel
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