Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZPJ entry

There are 8 chains in PDB entry 8ZPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	ARG 367
B	ASP 3	ARG 367
C	ASP 3	ARG 367
D	ASP 3	ARG 367
E	ASP 3	ARG 367
F	ASP 3	ARG 367
G	ASP 3	ARG 367
H	ASP 3	ARG 367

There are146 helices in PDB entry 8ZPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	18	Right-handed alpha
Helix 2	AA2	A	24	41	Right-handed alpha
Helix 3	AA3	A	51	60	Right-handed alpha
Helix 4	AA4	A	68	93	Right-handed alpha
Helix 5	AA5	A	104	110	Right-handed alpha
Helix 6	AA6	A	110	127	Right-handed alpha
Helix 7	AA7	A	141	146	Right-handed alpha
Helix 8	AA8	A	149	161	Right-handed alpha
Helix 9	AA9	A	195	202	Right-handed alpha
Helix 10	AB1	A	214	227	Right-handed alpha
Helix 11	AB2	A	240	248	Right-handed alpha
Helix 12	AB3	A	260	270	Right-handed alpha
Helix 13	AB4	A	281	291	Right-handed alpha
Helix 14	AB5	A	296	298	Right-handed 310
Helix 15	AB6	A	331	339	Right-handed alpha
Helix 16	AB7	A	342	344	Right-handed 310
Helix 17	AB8	A	345	351	Right-handed alpha
Helix 18	AB9	A	360	362	Right-handed 310
Helix 19	AC1	B	12	18	Right-handed alpha
Helix 20	AC2	B	24	41	Right-handed alpha
Helix 21	AC3	B	51	60	Right-handed alpha
Helix 22	AC4	B	68	93	Right-handed alpha
Helix 23	AC5	B	104	110	Right-handed alpha
Helix 24	AC6	B	110	127	Right-handed alpha
Helix 25	AC7	B	141	148	Right-handed alpha
Helix 26	AC8	B	149	161	Right-handed alpha
Helix 27	AC9	B	195	202	Right-handed alpha
Helix 28	AD1	B	214	227	Right-handed alpha
Helix 29	AD2	B	240	248	Right-handed alpha
Helix 30	AD3	B	260	270	Right-handed alpha
Helix 31	AD4	B	281	291	Right-handed alpha
Helix 32	AD5	B	296	298	Right-handed 310
Helix 33	AD6	B	331	339	Right-handed alpha
Helix 34	AD7	B	342	344	Right-handed 310
Helix 35	AD8	B	345	351	Right-handed alpha
Helix 36	AD9	B	360	362	Right-handed 310
Helix 37	AE1	C	12	18	Right-handed alpha
Helix 38	AE2	C	24	41	Right-handed alpha
Helix 39	AE3	C	51	60	Right-handed alpha
Helix 40	AE4	C	68	93	Right-handed alpha
Helix 41	AE5	C	104	110	Right-handed alpha
Helix 42	AE6	C	110	127	Right-handed alpha
Helix 43	AE7	C	137	140	Right-handed 310
Helix 44	AE8	C	141	146	Right-handed alpha
Helix 45	AE9	C	149	161	Right-handed alpha
Helix 46	AF1	C	195	202	Right-handed alpha
Helix 47	AF2	C	214	227	Right-handed alpha
Helix 48	AF3	C	240	248	Right-handed alpha
Helix 49	AF4	C	260	271	Right-handed alpha
Helix 50	AF5	C	281	290	Right-handed alpha
Helix 51	AF6	C	331	339	Right-handed alpha
Helix 52	AF7	C	342	344	Right-handed 310
Helix 53	AF8	C	345	351	Right-handed alpha
Helix 54	AF9	C	360	362	Right-handed 310
Helix 55	AG1	D	12	18	Right-handed alpha
Helix 56	AG2	D	24	41	Right-handed alpha
Helix 57	AG3	D	51	60	Right-handed alpha
Helix 58	AG4	D	68	93	Right-handed alpha
Helix 59	AG5	D	104	110	Right-handed alpha
Helix 60	AG6	D	110	127	Right-handed alpha
Helix 61	AG7	D	141	146	Right-handed alpha
Helix 62	AG8	D	149	161	Right-handed alpha
Helix 63	AG9	D	195	202	Right-handed alpha
Helix 64	AH1	D	214	227	Right-handed alpha
Helix 65	AH2	D	240	248	Right-handed alpha
Helix 66	AH3	D	260	271	Right-handed alpha
Helix 67	AH4	D	281	290	Right-handed alpha
Helix 68	AH5	D	331	339	Right-handed alpha
Helix 69	AH6	D	342	344	Right-handed 310
Helix 70	AH7	D	345	351	Right-handed alpha
Helix 71	AH8	D	360	362	Right-handed 310
Helix 72	AH9	E	12	18	Right-handed alpha
Helix 73	AI1	E	24	41	Right-handed alpha
Helix 74	AI2	E	51	60	Right-handed alpha
Helix 75	AI3	E	68	92	Right-handed alpha
Helix 76	AI4	E	93	95	Right-handed 310
Helix 77	AI5	E	104	110	Right-handed alpha
Helix 78	AI6	E	110	127	Right-handed alpha
Helix 79	AI7	E	141	148	Right-handed alpha
Helix 80	AI8	E	149	161	Right-handed alpha
Helix 81	AI9	E	195	202	Right-handed alpha
Helix 82	AJ1	E	214	227	Right-handed alpha
Helix 83	AJ2	E	240	248	Right-handed alpha
Helix 84	AJ3	E	260	270	Right-handed alpha
Helix 85	AJ4	E	281	290	Right-handed alpha
Helix 86	AJ5	E	296	298	Right-handed 310
Helix 87	AJ6	E	331	339	Right-handed alpha
Helix 88	AJ7	E	342	344	Right-handed 310
Helix 89	AJ8	E	345	351	Right-handed alpha
Helix 90	AJ9	E	360	362	Right-handed 310
Helix 91	AK1	F	12	18	Right-handed alpha
Helix 92	AK2	F	24	41	Right-handed alpha
Helix 93	AK3	F	51	60	Right-handed alpha
Helix 94	AK4	F	68	92	Right-handed alpha
Helix 95	AK5	F	93	95	Right-handed 310
Helix 96	AK6	F	104	110	Right-handed alpha
Helix 97	AK7	F	110	127	Right-handed alpha
Helix 98	AK8	F	137	140	Right-handed 310
Helix 99	AK9	F	141	146	Right-handed alpha
Helix 100	AL1	F	149	161	Right-handed alpha
Helix 101	AL2	F	195	202	Right-handed alpha
Helix 102	AL3	F	214	227	Right-handed alpha
Helix 103	AL4	F	240	248	Right-handed alpha
Helix 104	AL5	F	260	271	Right-handed alpha
Helix 105	AL6	F	281	291	Right-handed alpha
Helix 106	AL7	F	331	339	Right-handed alpha
Helix 107	AL8	F	342	344	Right-handed 310
Helix 108	AL9	F	345	351	Right-handed alpha
Helix 109	AM1	F	360	362	Right-handed 310
Helix 110	AM2	G	12	18	Right-handed alpha
Helix 111	AM3	G	24	41	Right-handed alpha
Helix 112	AM4	G	51	60	Right-handed alpha
Helix 113	AM5	G	68	93	Right-handed alpha
Helix 114	AM6	G	104	110	Right-handed alpha
Helix 115	AM7	G	110	127	Right-handed alpha
Helix 116	AM8	G	141	148	Right-handed alpha
Helix 117	AM9	G	149	161	Right-handed alpha
Helix 118	AN1	G	195	202	Right-handed alpha
Helix 119	AN2	G	214	227	Right-handed alpha
Helix 120	AN3	G	240	248	Right-handed alpha
Helix 121	AN4	G	260	270	Right-handed alpha
Helix 122	AN5	G	281	290	Right-handed alpha
Helix 123	AN6	G	296	298	Right-handed 310
Helix 124	AN7	G	331	339	Right-handed alpha
Helix 125	AN8	G	342	344	Right-handed 310
Helix 126	AN9	G	345	351	Right-handed alpha
Helix 127	AO1	G	360	362	Right-handed 310
Helix 128	AO2	H	12	18	Right-handed alpha
Helix 129	AO3	H	24	41	Right-handed alpha
Helix 130	AO4	H	51	60	Right-handed alpha
Helix 131	AO5	H	68	92	Right-handed alpha
Helix 132	AO6	H	93	95	Right-handed 310
Helix 133	AO7	H	104	110	Right-handed alpha
Helix 134	AO8	H	110	127	Right-handed alpha
Helix 135	AO9	H	141	148	Right-handed alpha
Helix 136	AP1	H	149	161	Right-handed alpha
Helix 137	AP2	H	195	202	Right-handed alpha
Helix 138	AP3	H	214	227	Right-handed alpha
Helix 139	AP4	H	240	248	Right-handed alpha
Helix 140	AP5	H	260	271	Right-handed alpha
Helix 141	AP6	H	281	291	Right-handed alpha
Helix 142	AP7	H	296	298	Right-handed 310
Helix 143	AP8	H	331	339	Right-handed alpha
Helix 144	AP9	H	342	344	Right-handed 310
Helix 145	AQ1	H	345	351	Right-handed alpha
Helix 146	AQ2	H	360	362	Right-handed 310

There are 16 sheets in PDB entry 8ZPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	129	135	parallel
Strand 3	A	44	49	parallel
Strand 4	A	6	11	parallel
Strand 5	A	164	169	parallel
Strand 6	A	230	235	parallel
Strand 7	A	253	255	anti-parallel
Strand 8	A	190	191	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	304	first strand
Strand 2	A	277	280	anti-parallel
Strand 3	A	312	316	parallel
Strand 4	A	322	327	anti-parallel
Strand 5	A	364	366	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	103	first strand
Strand 2	B	129	135	parallel
Strand 3	B	44	48	parallel
Strand 4	B	6	10	parallel
Strand 5	B	164	169	parallel
Strand 6	B	230	235	parallel
Strand 7	B	253	255	anti-parallel
Strand 8	B	190	191	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	304	first strand
Strand 2	B	277	280	anti-parallel
Strand 3	B	312	316	parallel
Strand 4	B	322	327	anti-parallel
Strand 5	B	364	366	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	103	first strand
Strand 2	C	129	135	parallel
Strand 3	C	44	48	parallel
Strand 4	C	6	11	parallel
Strand 5	C	164	169	parallel
Strand 6	C	230	235	parallel
Strand 7	C	253	255	anti-parallel
Strand 8	C	190	191	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	304	first strand
Strand 2	C	277	280	anti-parallel
Strand 3	C	312	316	parallel
Strand 4	C	322	327	anti-parallel
Strand 5	C	364	366	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	103	first strand
Strand 2	D	129	135	parallel
Strand 3	D	44	48	parallel
Strand 4	D	6	11	parallel
Strand 5	D	164	169	parallel
Strand 6	D	230	235	parallel
Strand 7	D	253	255	anti-parallel
Strand 8	D	190	191	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	304	first strand
Strand 2	D	277	280	anti-parallel
Strand 3	D	312	316	parallel
Strand 4	D	322	327	anti-parallel
Strand 5	D	364	366	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	103	first strand
Strand 2	E	130	135	parallel
Strand 3	E	44	48	parallel
Strand 4	E	6	11	parallel
Strand 5	E	164	169	parallel
Strand 6	E	230	235	parallel
Strand 7	E	253	255	anti-parallel
Strand 8	E	190	191	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	304	first strand
Strand 2	E	277	280	anti-parallel
Strand 3	E	312	317	parallel
Strand 4	E	322	327	anti-parallel
Strand 5	E	364	366	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	103	first strand
Strand 2	F	130	135	parallel
Strand 3	F	44	48	parallel
Strand 4	F	6	11	parallel
Strand 5	F	164	169	parallel
Strand 6	F	230	235	parallel
Strand 7	F	253	255	anti-parallel
Strand 8	F	190	191	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	304	first strand
Strand 2	F	277	280	anti-parallel
Strand 3	F	312	316	parallel
Strand 4	F	322	327	anti-parallel
Strand 5	F	364	366	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	103	first strand
Strand 2	G	129	135	parallel
Strand 3	G	44	49	parallel
Strand 4	G	6	11	parallel
Strand 5	G	164	169	parallel
Strand 6	G	230	235	parallel
Strand 7	G	253	255	anti-parallel
Strand 8	G	190	191	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	300	304	first strand
Strand 2	G	277	280	anti-parallel
Strand 3	G	312	316	parallel
Strand 4	G	322	327	anti-parallel
Strand 5	G	364	366	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	103	first strand
Strand 2	H	129	135	parallel
Strand 3	H	44	48	parallel
Strand 4	H	6	11	parallel
Strand 5	H	164	169	parallel
Strand 6	H	230	235	parallel
Strand 7	H	253	255	anti-parallel
Strand 8	H	190	191	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	300	304	first strand
Strand 2	H	277	280	anti-parallel
Strand 3	H	312	316	parallel
Strand 4	H	322	327	anti-parallel
Strand 5	H	364	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPJ