Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZPK entry

There are 8 chains in PDB entry 8ZPK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 236	LEU 620
E	MET 1	GLU 479
F	SER 271	GLU 426
G	T 1	C 38
H	T 33	A 72
A	PRO 355	LEU 914
C	PHE 15	ILE 616
D	ASP 46	LEU 529

There are138 helices in PDB entry 8ZPK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	241	249	Right-handed alpha
Helix 2	AA2	B	270	285	Right-handed alpha
Helix 3	AA3	B	286	298	Right-handed alpha
Helix 4	AA4	B	300	310	Right-handed alpha
Helix 5	AA5	B	322	333	Right-handed alpha
Helix 6	AA6	B	333	342	Right-handed alpha
Helix 7	AA7	B	371	384	Right-handed alpha
Helix 8	AA8	B	389	394	Right-handed alpha
Helix 9	AA9	B	400	411	Right-handed alpha
Helix 10	AB1	B	434	445	Right-handed alpha
Helix 11	AB2	B	460	465	Right-handed 310
Helix 12	AB3	B	468	474	Right-handed alpha
Helix 13	AB4	B	488	492	Right-handed 310
Helix 14	AB5	B	494	498	Right-handed 310
Helix 15	AB6	B	506	515	Right-handed alpha
Helix 16	AB7	B	518	540	Right-handed alpha
Helix 17	AB8	B	549	553	Right-handed 310
Helix 18	AB9	B	556	565	Right-handed alpha
Helix 19	AC1	B	571	585	Right-handed alpha
Helix 20	AC2	B	605	616	Right-handed alpha
Helix 21	AC3	E	11	22	Right-handed alpha
Helix 22	AC4	E	43	54	Right-handed alpha
Helix 23	AC5	E	70	89	Right-handed alpha
Helix 24	AC6	E	98	102	Right-handed 310
Helix 25	AC7	E	104	119	Right-handed alpha
Helix 26	AC8	E	135	138	Right-handed 310
Helix 27	AC9	E	145	152	Right-handed alpha
Helix 28	AD1	E	175	180	Right-handed 310
Helix 29	AD2	E	193	205	Right-handed alpha
Helix 30	AD3	E	206	211	Right-handed alpha
Helix 31	AD4	E	212	221	Right-handed alpha
Helix 32	AD5	E	227	252	Right-handed alpha
Helix 33	AD6	E	254	265	Right-handed alpha
Helix 34	AD7	E	265	273	Right-handed alpha
Helix 35	AD8	E	274	278	Right-handed 310
Helix 36	AD9	E	280	288	Right-handed alpha
Helix 37	AE1	E	289	293	Right-handed 310
Helix 38	AE2	E	325	340	Right-handed alpha
Helix 39	AE3	E	342	345	Right-handed 310
Helix 40	AE4	E	346	351	Right-handed alpha
Helix 41	AE5	E	372	376	Right-handed 310
Helix 42	AE6	E	382	394	Right-handed alpha
Helix 43	AE7	E	417	430	Right-handed alpha
Helix 44	AE8	E	455	465	Right-handed alpha
Helix 45	AE9	E	470	476	Right-handed alpha
Helix 46	AF1	F	281	291	Right-handed alpha
Helix 47	AF2	F	295	310	Right-handed alpha
Helix 48	AF3	F	315	332	Right-handed alpha
Helix 49	AF4	F	332	339	Right-handed alpha
Helix 50	AF5	F	341	354	Right-handed alpha
Helix 51	AF6	F	359	373	Right-handed alpha
Helix 52	AF7	F	376	387	Right-handed alpha
Helix 53	AF8	F	393	403	Right-handed alpha
Helix 54	AF9	F	414	426	Right-handed alpha
Helix 55	AG1	A	381	385	Right-handed 310
Helix 56	AG2	A	393	397	Right-handed 310
Helix 57	AG3	A	401	407	Right-handed alpha
Helix 58	AG4	A	421	429	Right-handed alpha
Helix 59	AG5	A	453	469	Right-handed alpha
Helix 60	AG6	A	484	502	Right-handed alpha
Helix 61	AG7	A	520	522	Right-handed 310
Helix 62	AG8	A	523	531	Right-handed alpha
Helix 63	AG9	A	538	553	Right-handed alpha
Helix 64	AH1	A	554	558	Right-handed 310
Helix 65	AH2	A	567	571	Right-handed 310
Helix 66	AH3	A	576	585	Right-handed alpha
Helix 67	AH4	A	603	609	Right-handed alpha
Helix 68	AH5	A	610	618	Right-handed alpha
Helix 69	AH6	A	630	640	Right-handed alpha
Helix 70	AH7	A	685	700	Right-handed alpha
Helix 71	AH8	A	703	726	Right-handed alpha
Helix 72	AH9	A	774	787	Right-handed alpha
Helix 73	AI1	A	790	795	Right-handed alpha
Helix 74	AI2	A	798	816	Right-handed alpha
Helix 75	AI3	A	822	836	Right-handed alpha
Helix 76	AI4	A	839	851	Right-handed alpha
Helix 77	AI5	A	865	876	Right-handed alpha
Helix 78	AI6	A	898	907	Right-handed alpha
Helix 79	AI7	A	909	914	Right-handed alpha
Helix 80	AI8	C	44	48	Right-handed 310
Helix 81	AI9	C	50	92	Right-handed alpha
Helix 82	AJ1	C	132	136	Right-handed 310
Helix 83	AJ2	C	139	159	Right-handed alpha
Helix 84	AJ3	C	185	190	Right-handed alpha
Helix 85	AJ4	C	190	195	Right-handed alpha
Helix 86	AJ5	C	207	211	Right-handed 310
Helix 87	AJ6	C	212	224	Right-handed alpha
Helix 88	AJ7	C	225	229	Right-handed 310
Helix 89	AJ8	C	243	251	Right-handed alpha
Helix 90	AJ9	C	252	260	Right-handed alpha
Helix 91	AK1	C	276	288	Right-handed alpha
Helix 92	AK2	C	295	307	Right-handed alpha
Helix 93	AK3	C	313	332	Right-handed alpha
Helix 94	AK4	C	334	344	Right-handed 310
Helix 95	AK5	C	347	355	Right-handed alpha
Helix 96	AK6	C	357	371	Right-handed alpha
Helix 97	AK7	C	374	381	Right-handed alpha
Helix 98	AK8	C	384	395	Right-handed alpha
Helix 99	AK9	C	401	415	Right-handed alpha
Helix 100	AL1	C	423	434	Right-handed alpha
Helix 101	AL2	C	435	441	Right-handed alpha
Helix 102	AL3	C	442	444	Right-handed 310
Helix 103	AL4	C	462	466	Right-handed 310
Helix 104	AL5	C	474	479	Right-handed alpha
Helix 105	AL6	C	482	493	Right-handed alpha
Helix 106	AL7	C	494	497	Right-handed 310
Helix 107	AL8	C	510	517	Right-handed alpha
Helix 108	AL9	C	519	531	Right-handed alpha
Helix 109	AM1	C	537	548	Right-handed alpha
Helix 110	AM2	C	550	560	Right-handed alpha
Helix 111	AM3	C	564	571	Right-handed alpha
Helix 112	AM4	C	574	595	Right-handed alpha
Helix 113	AM5	D	47	61	Right-handed alpha
Helix 114	AM6	D	65	69	Right-handed 310
Helix 115	AM7	D	72	74	Right-handed 310
Helix 116	AM8	D	75	91	Right-handed alpha
Helix 117	AM9	D	108	120	Right-handed alpha
Helix 118	AN1	D	140	158	Right-handed alpha
Helix 119	AN2	D	176	189	Right-handed alpha
Helix 120	AN3	D	218	222	Right-handed 310
Helix 121	AN4	D	229	240	Right-handed alpha
Helix 122	AN5	D	255	259	Right-handed 310
Helix 123	AN6	D	261	268	Right-handed alpha
Helix 124	AN7	D	281	292	Right-handed alpha
Helix 125	AN8	D	301	314	Right-handed alpha
Helix 126	AN9	D	318	331	Right-handed alpha
Helix 127	AO1	D	333	348	Right-handed alpha
Helix 128	AO2	D	350	361	Right-handed alpha
Helix 129	AO3	D	361	372	Right-handed alpha
Helix 130	AO4	D	375	380	Right-handed alpha
Helix 131	AO5	D	384	401	Right-handed alpha
Helix 132	AO6	D	407	426	Right-handed alpha
Helix 133	AO7	D	452	466	Right-handed alpha
Helix 134	AO8	D	480	488	Right-handed alpha
Helix 135	AO9	D	492	496	Right-handed 310
Helix 136	AP1	D	498	502	Right-handed 310
Helix 137	AP2	D	509	517	Right-handed alpha
Helix 138	AP3	D	523	527	Right-handed 310

There are 12 sheets in PDB entry 8ZPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	313	317	parallel
Strand 3	B	450	456	parallel
Strand 4	B	420	424	parallel
Strand 5	B	360	363	parallel
Strand 6	C	22	25	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	598	601	anti-parallel
Strand 3	B	589	592	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	62	first strand
Strand 2	E	126	133	parallel
Strand 3	E	162	170	parallel
Strand 4	E	34	36	parallel
Strand 5	E	186	188	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	511	first strand
Strand 2	A	560	563	parallel
Strand 3	A	593	599	parallel
Strand 4	A	473	479	parallel
Strand 5	A	620	624	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	677	684	anti-parallel
Strand 4	A	770	773	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	891	894	anti-parallel
Strand 3	A	879	881	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	240	first strand
Strand 2	C	104	108	parallel
Strand 3	C	263	267	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	202	205	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	600	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	251	parallel
Strand 4	D	96	101	parallel
Strand 5	D	272	274	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	471	first strand
Strand 2	D	504	506	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZPK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPK