Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZPN entry

There are 2 chains in PDB entry 8ZPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
 ALA 34ALA 315
N
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8ZPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
R
34 65Right-handed alpha
Helix 2
AA2
R
71 100Right-handed alpha
Helix 3
AA3
R
105 140Right-handed alpha
Helix 4
AA4
R
145 154Right-handed alpha
Helix 5
AA5
R
155 167Right-handed alpha
Helix 6
AA6
R
168 174Right-handed alpha
Helix 7
AA7
R
192 227Right-handed alpha
Helix 8
AA8
R
235 275Right-handed alpha
Helix 9
AA9
R
281 300Right-handed alpha
Helix 10
AB1
R
301 303Right-handed 310
Helix 11
AB2
R
304 313Right-handed alpha
Helix 12
AB3
N
88 92Right-handed 310
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There are 5 sheets in PDB entry 8ZPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
175 177first strand
Strand 2
R
186 188anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
4 6first strand
Strand 2
N
26 28anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
12 14first strand
Strand 2
N
117 121parallel
Strand 3
N
93 102anti-parallel
Strand 4
N
32 40anti-parallel
Strand 5
N
48 54anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
12 14first strand
Strand 2
N
117 121parallel
Strand 3
N
93 102anti-parallel
Strand 4
N
110 113anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
21 22first strand
Strand 2
N
79 83anti-parallel
Strand 3
N
70 74anti-parallel
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