Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZPU entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8ZPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1GLY 248
C
 PHE 4PHE 7
C
 TYR 9SER 10
B
 GLN 1GLY 248
D
 HIS 3PHE 7
D
 TYR 9SER 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8ZPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 87Right-handed 310
Helix 2
AA2
A
163 167Right-handed 310
Helix 3
AA3
A
215 219Right-handed 310
Helix 4
AA4
A
229 233Right-handed 310
Helix 5
AA5
C
5 9Right-handed 310
Helix 6
AA6
B
27 31Right-handed 310
Helix 7
AA7
B
83 87Right-handed 310
Helix 8
AA8
B
163 167Right-handed 310
Helix 9
AA9
B
215 219Right-handed 310
Helix 10
AB1
B
229 233Right-handed 310
Helix 11
AB2
D
5 9Right-handed 310
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There are 12 sheets in PDB entry 8ZPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
66 70anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
113 117parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
A
45 50anti-parallel
Strand 6
A
56 58anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
113 117parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
102 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
206 212anti-parallel
Strand 4
A
198 203anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
242 247parallel
Strand 3
A
220 227anti-parallel
Strand 4
A
169 174anti-parallel
Strand 5
A
181 185anti-parallel
Strand 6
A
189 190anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
242 247parallel
Strand 3
A
220 227anti-parallel
Strand 4
A
236 238anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
17 24anti-parallel
Strand 3
B
74 79anti-parallel
Strand 4
B
66 70anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
113 117parallel
Strand 3
B
88 97anti-parallel
Strand 4
B
32 38anti-parallel
Strand 5
B
45 50anti-parallel
Strand 6
B
56 58anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
113 117parallel
Strand 3
B
88 97anti-parallel
Strand 4
B
102 109anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 141first strand
Strand 2
B
152 159anti-parallel
Strand 3
B
206 212anti-parallel
Strand 4
B
198 203anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
242 247parallel
Strand 3
B
220 227anti-parallel
Strand 4
B
169 174anti-parallel
Strand 5
B
181 185anti-parallel
Strand 6
B
189 190anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
242 247parallel
Strand 3
B
220 227anti-parallel
Strand 4
B
236 238anti-parallel
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