Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZPV entry

There are 5 chains in PDB entry 8ZPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8ASN 1453
B
 GLY 519GLY 569
C
 GLY 519VAL 572
D
 GLY 519ILE 709
E
 GLY 519SER 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8ZPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 34Right-handed alpha
Helix 2
AA2
A
43 57Right-handed alpha
Helix 3
AA3
A
60 77Right-handed alpha
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
91 96Right-handed alpha
Helix 6
AA6
A
104 137Right-handed alpha
Helix 7
AA7
A
147 155Right-handed alpha
Helix 8
AA8
A
156 163Right-handed alpha
Helix 9
AA9
A
166 187Right-handed alpha
Helix 10
AB1
A
189 193Right-handed 310
Helix 11
AB2
A
231 255Right-handed alpha
Helix 12
AB3
A
260 273Right-handed alpha
Helix 13
AB4
A
275 280Right-handed alpha
Helix 14
AB5
A
282 288Right-handed alpha
Helix 15
AB6
A
289 300Right-handed alpha
Helix 16
AB7
A
304 308Right-handed 310
Helix 17
AB8
A
309 327Right-handed alpha
Helix 18
AB9
A
330 346Right-handed alpha
Helix 19
AC1
A
349 354Right-handed alpha
Helix 20
AC2
A
355 362Right-handed 310
Helix 21
AC3
A
369 382Right-handed alpha
Helix 22
AC4
A
388 409Right-handed alpha
Helix 23
AC5
A
425 435Right-handed alpha
Helix 24
AC6
A
439 446Right-handed alpha
Helix 25
AC7
A
467 472Right-handed alpha
Helix 26
AC8
A
479 483Right-handed 310
Helix 27
AC9
A
488 492Right-handed 310
Helix 28
AD1
A
504 512Right-handed alpha
Helix 29
AD2
A
516 526Right-handed alpha
Helix 30
AD3
A
557 574Right-handed alpha
Helix 31
AD4
A
575 578Right-handed 310
Helix 32
AD5
A
725 730Right-handed alpha
Helix 33
AD6
A
731 747Right-handed alpha
Helix 34
AD7
A
754 760Right-handed alpha
Helix 35
AD8
A
780 784Right-handed 310
Helix 36
AD9
A
802 822Right-handed alpha
Helix 37
AE1
A
847 874Right-handed alpha
Helix 38
AE2
A
904 910Right-handed alpha
Helix 39
AE3
A
922 941Right-handed alpha
Helix 40
AE4
A
943 965Right-handed alpha
Helix 41
AE5
A
972 982Right-handed alpha
Helix 42
AE6
A
982 992Right-handed alpha
Helix 43
AE7
A
993 997Right-handed 310
Helix 44
AE8
A
1003 1008Right-handed 310
Helix 45
AE9
A
1014 1029Right-handed alpha
Helix 46
AF1
A
1034 1042Right-handed alpha
Helix 47
AF2
A
1049 1056Right-handed alpha
Helix 48
AF3
A
1067 1082Right-handed alpha
Helix 49
AF4
A
1086 1090Right-handed 310
Helix 50
AF5
A
1096 1110Right-handed alpha
Helix 51
AF6
A
1115 1120Right-handed alpha
Helix 52
AF7
A
1121 1126Right-handed alpha
Helix 53
AF8
A
1127 1138Right-handed alpha
Helix 54
AF9
A
1141 1153Right-handed alpha
Helix 55
AG1
A
1155 1164Right-handed alpha
Helix 56
AG2
A
1164 1178Right-handed alpha
Helix 57
AG3
A
1191 1204Right-handed alpha
Helix 58
AG4
A
1292 1309Right-handed alpha
Helix 59
AG5
A
1311 1323Right-handed alpha
Helix 60
AG6
A
1393 1407Right-handed alpha
Helix 61
AG7
B
522 539Right-handed alpha
Helix 62
AG8
B
542 548Right-handed alpha
Helix 63
AG9
B
550 556Right-handed alpha
Helix 64
AH1
B
557 565Right-handed alpha
Helix 65
AH2
C
520 530Right-handed alpha
Helix 66
AH3
C
530 541Right-handed alpha
Helix 67
AH4
C
543 557Right-handed alpha
Helix 68
AH5
C
558 562Right-handed 310
Helix 69
AH6
D
520 552Right-handed alpha
Helix 70
AH7
D
552 565Right-handed alpha
Helix 71
AH8
D
657 672Right-handed alpha
Helix 72
AH9
D
674 688Right-handed alpha
Helix 73
AI1
D
690 707Right-handed alpha
Helix 74
AI2
E
520 542Right-handed alpha
Helix 75
AI3
E
542 563Right-handed alpha
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There are 9 sheets in PDB entry 8ZPV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
224 230parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
206 210anti-parallel
Strand 5
A
199 202anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
C
566 567anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
454 455anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
552 555anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
824 827first strand
Strand 2
A
835 842anti-parallel
Strand 3
A
713 720anti-parallel
Strand 4
A
883 885anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 765first strand
Strand 2
A
790 792anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
888 891first strand
Strand 2
A
894 897anti-parallel
Strand 3
A
900 901anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1113 1114first strand
Strand 2
A
1212 1213parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1230first strand
Strand 2
A
1418 1423anti-parallel
Strand 3
A
1249 1251anti-parallel
Strand 4
A
1371 1372anti-parallel
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