Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZPW entry

There are 2 chains in PDB entry 8ZPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 23	VAL 796
B	GLN 24	LYS 500

There are 46 helices in PDB entry 8ZPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	53	Right-handed alpha
Helix 2	AA2	A	77	82	Right-handed alpha
Helix 3	AA3	A	88	101	Right-handed alpha
Helix 4	AA4	A	103	118	Right-handed alpha
Helix 5	AA5	A	131	150	Right-handed alpha
Helix 6	AA6	A	158	162	Right-handed 310
Helix 7	AA7	A	164	178	Right-handed alpha
Helix 8	AA8	A	179	182	Right-handed 310
Helix 9	AA9	A	213	218	Right-handed alpha
Helix 10	AB1	A	219	231	Right-handed alpha
Helix 11	AB2	A	233	249	Right-handed alpha
Helix 12	AB3	A	278	292	Right-handed alpha
Helix 13	AB4	A	294	311	Right-handed alpha
Helix 14	AB5	A	336	338	Right-handed 310
Helix 15	AB6	A	339	348	Right-handed alpha
Helix 16	AB7	A	349	368	Right-handed alpha
Helix 17	AB8	A	408	422	Right-handed alpha
Helix 18	AB9	A	423	441	Right-handed alpha
Helix 19	AC1	A	463	479	Right-handed alpha
Helix 20	AC2	A	482	487	Right-handed alpha
Helix 21	AC3	A	503	513	Right-handed alpha
Helix 22	AC4	A	594	600	Right-handed alpha
Helix 23	AC5	A	601	603	Right-handed 310
Helix 24	AC6	A	604	610	Right-handed alpha
Helix 25	AC7	A	617	621	Right-handed 310
Helix 26	AC8	A	625	628	Right-handed 310
Helix 27	AC9	A	629	634	Right-handed alpha
Helix 28	AD1	A	704	708	Right-handed 310
Helix 29	AD2	A	719	726	Right-handed alpha
Helix 30	AD3	B	38	49	Right-handed alpha
Helix 31	AD4	B	61	80	Right-handed alpha
Helix 32	AD5	B	93	100	Right-handed alpha
Helix 33	AD6	B	127	140	Right-handed alpha
Helix 34	AD7	B	148	156	Right-handed alpha
Helix 35	AD8	B	170	184	Right-handed alpha
Helix 36	AD9	B	219	224	Right-handed alpha
Helix 37	AE1	B	225	237	Right-handed alpha
Helix 38	AE2	B	245	256	Right-handed alpha
Helix 39	AE3	B	266	284	Right-handed alpha
Helix 40	AE4	B	299	305	Right-handed alpha
Helix 41	AE5	B	331	338	Right-handed alpha
Helix 42	AE6	B	345	359	Right-handed alpha
Helix 43	AE7	B	382	391	Right-handed alpha
Helix 44	AE8	B	406	425	Right-handed alpha
Helix 45	AE9	B	472	484	Right-handed alpha
Helix 46	AF1	B	489	500	Right-handed alpha

There are 14 sheets in PDB entry 8ZPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	66	68	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	191	193	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	259	260	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	321	322	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	373	375	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	452	first strand
Strand 2	A	457	458	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	493	first strand
Strand 2	A	499	500	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	663	first strand
Strand 2	A	680	692	anti-parallel
Strand 3	A	732	739	anti-parallel
Strand 4	A	742	743	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	669	first strand
Strand 2	A	674	677	anti-parallel
Strand 3	A	749	753	parallel
Strand 4	A	793	796	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	777	first strand
Strand 2	A	783	785	anti-parallel
Strand 3	A	788	789	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	84	89	parallel
Strand 3	B	52	57	parallel
Strand 4	B	107	111	anti-parallel
Strand 5	B	120	121	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	189	192	parallel
Strand 3	B	162	166	parallel
Strand 4	B	201	206	anti-parallel
Strand 5	B	209	213	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	294	first strand
Strand 2	B	259	264	parallel
Strand 3	B	313	318	anti-parallel
Strand 4	B	323	326	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	381	first strand
Strand 2	B	430	436	parallel
Strand 3	B	396	402	parallel
Strand 4	B	452	456	anti-parallel
Strand 5	B	465	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPW