Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZPZ entry

There is 1 chain in PDB entry 8ZPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 26	GLY 1276

There are 69 helices in PDB entry 8ZPZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	37	42	Right-handed 310
Helix 2	AA2	B	48	56	Right-handed alpha
Helix 3	AA3	B	57	74	Right-handed alpha
Helix 4	AA4	B	78	92	Right-handed alpha
Helix 5	AA5	B	92	97	Right-handed alpha
Helix 6	AA6	B	97	109	Right-handed alpha
Helix 7	AA7	B	118	129	Right-handed alpha
Helix 8	AA8	B	136	141	Right-handed alpha
Helix 9	AA9	B	145	153	Right-handed alpha
Helix 10	AB1	B	153	161	Right-handed alpha
Helix 11	AB2	B	166	185	Right-handed alpha
Helix 12	AB3	B	187	196	Right-handed alpha
Helix 13	AB4	B	197	217	Right-handed alpha
Helix 14	AB5	B	218	226	Right-handed alpha
Helix 15	AB6	B	227	236	Right-handed alpha
Helix 16	AB7	B	236	243	Right-handed alpha
Helix 17	AB8	B	258	273	Right-handed alpha
Helix 18	AB9	B	275	299	Right-handed alpha
Helix 19	AC1	B	310	319	Right-handed alpha
Helix 20	AC2	B	321	323	Right-handed 310
Helix 21	AC3	B	324	337	Right-handed alpha
Helix 22	AC4	B	338	346	Right-handed alpha
Helix 23	AC5	B	411	417	Right-handed alpha
Helix 24	AC6	B	433	437	Right-handed 310
Helix 25	AC7	B	438	443	Right-handed alpha
Helix 26	AC8	B	472	483	Right-handed alpha
Helix 27	AC9	B	485	492	Right-handed alpha
Helix 28	AD1	B	494	497	Right-handed 310
Helix 29	AD2	B	508	524	Right-handed alpha
Helix 30	AD3	B	538	554	Right-handed alpha
Helix 31	AD4	B	564	571	Right-handed alpha
Helix 32	AD5	B	587	593	Right-handed alpha
Helix 33	AD6	B	598	603	Right-handed alpha
Helix 34	AD7	B	603	613	Right-handed alpha
Helix 35	AD8	B	680	693	Right-handed alpha
Helix 36	AD9	B	719	728	Right-handed alpha
Helix 37	AE1	B	732	750	Right-handed alpha
Helix 38	AE2	B	751	762	Right-handed alpha
Helix 39	AE3	B	764	780	Right-handed alpha
Helix 40	AE4	B	780	785	Right-handed alpha
Helix 41	AE5	B	786	787	Right-handed 310
Helix 42	AE6	B	788	794	Right-handed 310
Helix 43	AE7	B	798	809	Right-handed alpha
Helix 44	AE8	B	817	829	Right-handed alpha
Helix 45	AE9	B	830	842	Right-handed alpha
Helix 46	AF1	B	842	852	Right-handed alpha
Helix 47	AF2	B	853	862	Right-handed alpha
Helix 48	AF3	B	873	878	Right-handed alpha
Helix 49	AF4	B	880	889	Right-handed alpha
Helix 50	AF5	B	891	898	Right-handed alpha
Helix 51	AF6	B	904	910	Right-handed alpha
Helix 52	AF7	B	912	917	Right-handed alpha
Helix 53	AF8	B	918	939	Right-handed alpha
Helix 54	AF9	B	940	954	Right-handed alpha
Helix 55	AG1	B	958	972	Right-handed alpha
Helix 56	AG2	B	976	980	Right-handed 310
Helix 57	AG3	B	988	1001	Right-handed alpha
Helix 58	AG4	B	1066	1073	Right-handed alpha
Helix 59	AG5	B	1089	1093	Right-handed 310
Helix 60	AG6	B	1094	1099	Right-handed alpha
Helix 61	AG7	B	1115	1121	Right-handed alpha
Helix 62	AG8	B	1128	1139	Right-handed alpha
Helix 63	AG9	B	1141	1148	Right-handed alpha
Helix 64	AH1	B	1164	1177	Right-handed alpha
Helix 65	AH2	B	1194	1209	Right-handed alpha
Helix 66	AH3	B	1220	1225	Right-handed 310
Helix 67	AH4	B	1243	1251	Right-handed alpha
Helix 68	AH5	B	1254	1259	Right-handed alpha
Helix 69	AH6	B	1260	1263	Right-handed 310

There are 6 sheets in PDB entry 8ZPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	393	first strand
Strand 2	B	368	375	anti-parallel
Strand 3	B	424	429	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	449	first strand
Strand 2	B	527	531	parallel
Strand 3	B	557	561	parallel
Strand 4	B	398	402	parallel
Strand 5	B	573	578	parallel
Strand 6	B	581	586	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	499	500	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1042	1048	first strand
Strand 2	B	1024	1031	anti-parallel
Strand 3	B	1080	1085	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1057	1058	first strand
Strand 2	B	1230	1234	parallel
Strand 3	B	1237	1242	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1102	1105	first strand
Strand 2	B	1183	1186	parallel
Strand 3	B	1213	1216	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZPZ