Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZQ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZQ4 entry

There is 1 chain in PDB entry 8ZQ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 26	GLN 1263

There are 71 helices in PDB entry 8ZQ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	38	42	Right-handed 310
Helix 2	AA2	B	45	54	Right-handed alpha
Helix 3	AA3	B	58	74	Right-handed alpha
Helix 4	AA4	B	79	90	Right-handed alpha
Helix 5	AA5	B	92	99	Right-handed alpha
Helix 6	AA6	B	119	129	Right-handed alpha
Helix 7	AA7	B	134	139	Right-handed 310
Helix 8	AA8	B	153	158	Right-handed alpha
Helix 9	AA9	B	159	162	Right-handed 310
Helix 10	AB1	B	163	179	Right-handed alpha
Helix 11	AB2	B	190	195	Right-handed alpha
Helix 12	AB3	B	197	203	Right-handed alpha
Helix 13	AB4	B	204	226	Right-handed alpha
Helix 14	AB5	B	230	235	Right-handed alpha
Helix 15	AB6	B	236	241	Right-handed alpha
Helix 16	AB7	B	250	256	Right-handed alpha
Helix 17	AB8	B	258	263	Right-handed alpha
Helix 18	AB9	B	264	277	Right-handed alpha
Helix 19	AC1	B	282	286	Right-handed 310
Helix 20	AC2	B	291	298	Right-handed alpha
Helix 21	AC3	B	308	318	Right-handed alpha
Helix 22	AC4	B	321	324	Right-handed 310
Helix 23	AC5	B	325	330	Right-handed alpha
Helix 24	AC6	B	331	338	Right-handed alpha
Helix 25	AC7	B	341	346	Right-handed alpha
Helix 26	AC8	B	412	417	Right-handed alpha
Helix 27	AC9	B	438	443	Right-handed alpha
Helix 28	AD1	B	459	465	Right-handed alpha
Helix 29	AD2	B	472	483	Right-handed alpha
Helix 30	AD3	B	485	492	Right-handed alpha
Helix 31	AD4	B	494	498	Right-handed 310
Helix 32	AD5	B	508	522	Right-handed alpha
Helix 33	AD6	B	538	553	Right-handed alpha
Helix 34	AD7	B	564	570	Right-handed alpha
Helix 35	AD8	B	588	594	Right-handed alpha
Helix 36	AD9	B	599	606	Right-handed alpha
Helix 37	AE1	B	608	624	Right-handed alpha
Helix 38	AE2	B	704	713	Right-handed alpha
Helix 39	AE3	B	715	728	Right-handed alpha
Helix 40	AE4	B	734	756	Right-handed alpha
Helix 41	AE5	B	763	785	Right-handed alpha
Helix 42	AE6	B	788	793	Right-handed alpha
Helix 43	AE7	B	798	803	Right-handed alpha
Helix 44	AE8	B	807	812	Right-handed alpha
Helix 45	AE9	B	813	818	Right-handed alpha
Helix 46	AF1	B	818	827	Right-handed alpha
Helix 47	AF2	B	830	842	Right-handed alpha
Helix 48	AF3	B	844	852	Right-handed alpha
Helix 49	AF4	B	852	866	Right-handed alpha
Helix 50	AF5	B	875	877	Right-handed 310
Helix 51	AF6	B	878	891	Right-handed alpha
Helix 52	AF7	B	891	898	Right-handed alpha
Helix 53	AF8	B	902	910	Right-handed alpha
Helix 54	AF9	B	913	922	Right-handed alpha
Helix 55	AG1	B	922	927	Right-handed alpha
Helix 56	AG2	B	927	932	Right-handed alpha
Helix 57	AG3	B	935	945	Right-handed alpha
Helix 58	AG4	B	946	954	Right-handed alpha
Helix 59	AG5	B	958	981	Right-handed alpha
Helix 60	AG6	B	992	1001	Right-handed alpha
Helix 61	AG7	B	1061	1067	Right-handed 310
Helix 62	AG8	B	1068	1073	Right-handed alpha
Helix 63	AG9	B	1094	1099	Right-handed alpha
Helix 64	AH1	B	1115	1122	Right-handed alpha
Helix 65	AH2	B	1128	1139	Right-handed alpha
Helix 66	AH3	B	1141	1147	Right-handed alpha
Helix 67	AH4	B	1150	1154	Right-handed 310
Helix 68	AH5	B	1164	1178	Right-handed alpha
Helix 69	AH6	B	1194	1208	Right-handed alpha
Helix 70	AH7	B	1243	1248	Right-handed alpha
Helix 71	AH8	B	1254	1263	Right-handed alpha

There are 5 sheets in PDB entry 8ZQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	393	first strand
Strand 2	B	368	375	anti-parallel
Strand 3	B	427	429	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	449	first strand
Strand 2	B	527	531	parallel
Strand 3	B	557	561	parallel
Strand 4	B	398	401	parallel
Strand 5	B	573	577	parallel
Strand 6	B	582	587	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1042	1048	first strand
Strand 2	B	1024	1031	anti-parallel
Strand 3	B	1080	1085	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1057	1058	first strand
Strand 2	B	1230	1234	parallel
Strand 3	B	1237	1242	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1102	1104	first strand
Strand 2	B	1183	1186	parallel
Strand 3	B	1213	1216	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZQ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZQ4