Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZQ9 entry

There are 2 chains in PDB entry 8ZQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 C 15 U 149
B
 ARG 3LYS 633
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8ZQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
39 74Right-handed alpha
Helix 2
AA2
B
80 91Right-handed alpha
Helix 3
AA3
B
117 133Right-handed alpha
Helix 4
AA4
B
136 150Right-handed alpha
Helix 5
AA5
B
155 166Right-handed alpha
Helix 6
AA6
B
197 207Right-handed alpha
Helix 7
AA7
B
212 224Right-handed alpha
Helix 8
AA8
B
228 239Right-handed alpha
Helix 9
AA9
B
242 254Right-handed alpha
Helix 10
AB1
B
264 268Right-handed 310
Helix 11
AB2
B
285 304Right-handed alpha
Helix 12
AB3
B
449 462Right-handed alpha
Helix 13
AB4
B
474 485Right-handed alpha
Helix 14
AB5
B
493 506Right-handed alpha
Helix 15
AB6
B
579 583Right-handed 310
Helix 16
AB7
B
585 599Right-handed alpha
Helix 17
AB8
B
611 615Right-handed alpha
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There are 2 sheets in PDB entry 8ZQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 35first strand
Strand 2
B
15 22anti-parallel
Strand 3
B
5 11anti-parallel
Strand 4
B
310 315parallel
Strand 5
B
470 471parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
561 562first strand
Strand 2
B
565 571anti-parallel
Strand 3
B
627 631anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il