Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZQB entry

There are 2 chains in PDB entry 8ZQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 908
B
 G -36 U 1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8ZQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 39Right-handed alpha
Helix 2
AA2
A
57 69Right-handed alpha
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
92 96Right-handed 310
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
187 199Right-handed alpha
Helix 7
AA7
A
211 252Right-handed alpha
Helix 8
AA8
A
255 270Right-handed alpha
Helix 9
AA9
A
279 284Right-handed alpha
Helix 10
AB1
A
298 303Right-handed alpha
Helix 11
AB2
A
316 330Right-handed alpha
Helix 12
AB3
A
387 391Right-handed 310
Helix 13
AB4
A
447 454Right-handed alpha
Helix 14
AB5
A
524 553Right-handed alpha
Helix 15
AB6
A
556 566Right-handed alpha
Helix 16
AB7
A
566 572Right-handed alpha
Helix 17
AB8
A
579 606Right-handed alpha
Helix 18
AB9
A
607 609Right-handed 310
Helix 19
AC1
A
612 616Right-handed 310
Helix 20
AC2
A
620 641Right-handed alpha
Helix 21
AC3
A
660 688Right-handed alpha
Helix 22
AC4
A
715 720Right-handed alpha
Helix 23
AC5
A
723 736Right-handed alpha
Helix 24
AC6
A
782 797Right-handed alpha
Helix 25
AC7
A
820 831Right-handed alpha
Helix 26
AC8
A
880 885Right-handed alpha
Helix 27
AC9
A
888 898Right-handed alpha
Helix 28
AD1
A
899 903Right-handed 310
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There are 7 sheets in PDB entry 8ZQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
414 429anti-parallel
Strand 4
A
349 352anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
432 440anti-parallel
Strand 3
A
414 429anti-parallel
Strand 4
A
403 410anti-parallel
Strand 5
A
394 397anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 365first strand
Strand 2
A
368 373anti-parallel
Strand 3
A
381 383anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 517first strand
Strand 2
A
485 491anti-parallel
Strand 3
A
473 479anti-parallel
Strand 4
A
693 697parallel
Strand 5
A
742 743parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
506 511anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
768 773anti-parallel
Strand 3
A
776 781anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
845 848first strand
Strand 2
A
837 841anti-parallel
Strand 3
A
814 816anti-parallel
Strand 4
A
803 807anti-parallel
Strand 5
A
869 872anti-parallel
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