Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZQD entry

There are 2 chains in PDB entry 8ZQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 15ARG 640
B
 SER 15ARG 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8ZQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
21 27Right-handed alpha
Helix 3
AA3
A
53 61Right-handed alpha
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
113 130Right-handed alpha
Helix 6
AA6
A
134 139Right-handed 310
Helix 7
AA7
A
140 156Right-handed alpha
Helix 8
AA8
A
161 179Right-handed alpha
Helix 9
AA9
A
183 192Right-handed alpha
Helix 10
AB1
A
192 203Right-handed alpha
Helix 11
AB2
A
226 232Right-handed alpha
Helix 12
AB3
A
256 262Right-handed alpha
Helix 13
AB4
A
272 282Right-handed alpha
Helix 14
AB5
A
298 302Right-handed 310
Helix 15
AB6
A
311 323Right-handed alpha
Helix 16
AB7
A
330 354Right-handed alpha
Helix 17
AB8
A
368 378Right-handed alpha
Helix 18
AB9
A
379 383Right-handed 310
Helix 19
AC1
A
391 403Right-handed alpha
Helix 20
AC2
A
403 408Right-handed alpha
Helix 21
AC3
A
411 413Right-handed 310
Helix 22
AC4
A
424 432Right-handed alpha
Helix 23
AC5
A
449 459Right-handed alpha
Helix 24
AC6
A
479 484Right-handed alpha
Helix 25
AC7
A
485 487Right-handed 310
Helix 26
AC8
A
489 505Right-handed alpha
Helix 27
AC9
A
541 555Right-handed alpha
Helix 28
AD1
A
570 574Right-handed 310
Helix 29
AD2
A
583 602Right-handed alpha
Helix 30
AD3
A
606 609Right-handed 310
Helix 31
AD4
A
610 620Right-handed alpha
Helix 32
AD5
A
626 634Right-handed alpha
Helix 33
AD6
B
15 19Right-handed 310
Helix 34
AD7
B
21 27Right-handed alpha
Helix 35
AD8
B
53 61Right-handed alpha
Helix 36
AD9
B
84 88Right-handed 310
Helix 37
AE1
B
113 130Right-handed alpha
Helix 38
AE2
B
134 139Right-handed 310
Helix 39
AE3
B
140 156Right-handed alpha
Helix 40
AE4
B
161 179Right-handed alpha
Helix 41
AE5
B
183 192Right-handed alpha
Helix 42
AE6
B
192 203Right-handed alpha
Helix 43
AE7
B
226 232Right-handed alpha
Helix 44
AE8
B
256 262Right-handed alpha
Helix 45
AE9
B
272 282Right-handed alpha
Helix 46
AF1
B
298 302Right-handed 310
Helix 47
AF2
B
311 323Right-handed alpha
Helix 48
AF3
B
330 354Right-handed alpha
Helix 49
AF4
B
368 378Right-handed alpha
Helix 50
AF5
B
379 383Right-handed 310
Helix 51
AF6
B
391 403Right-handed alpha
Helix 52
AF7
B
403 408Right-handed alpha
Helix 53
AF8
B
411 413Right-handed 310
Helix 54
AF9
B
424 432Right-handed alpha
Helix 55
AG1
B
449 459Right-handed alpha
Helix 56
AG2
B
479 484Right-handed alpha
Helix 57
AG3
B
485 487Right-handed 310
Helix 58
AG4
B
489 505Right-handed alpha
Helix 59
AG5
B
541 555Right-handed alpha
Helix 60
AG6
B
570 574Right-handed 310
Helix 61
AG7
B
583 602Right-handed alpha
Helix 62
AG8
B
606 609Right-handed 310
Helix 63
AG9
B
610 620Right-handed alpha
Helix 64
AH1
B
626 634Right-handed alpha
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There are 12 sheets in PDB entry 8ZQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
104 109parallel
Strand 4
A
70 75anti-parallel
Strand 5
A
82 83anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
246 247anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
286 291parallel
Strand 3
A
415 421parallel
Strand 4
A
445 448parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
561 564parallel
Strand 3
A
534 539parallel
Strand 4
A
522 527anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
440 441anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
104 109parallel
Strand 4
B
70 75anti-parallel
Strand 5
B
82 83anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 218first strand
Strand 2
B
267 268anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
246 247anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
286 291parallel
Strand 3
B
415 421parallel
Strand 4
B
445 448parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 364first strand
Strand 2
B
561 564parallel
Strand 3
B
534 539parallel
Strand 4
B
522 527anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 437first strand
Strand 2
B
440 441anti-parallel
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