Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZR4 entry

There are 12 chains in PDB entry 8ZR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	VAL 133
B	ILE 2	ILE 112
D	ALA 6	MET 391
F	GLY 2	THR 132
G	ILE 2	ASP 111
H	ALA 6	MET 391
I	GLY 2	VAL 133
J	ILE 2	ASP 111
K	ALA 6	MET 391
L	GLY 2	VAL 133
M	ILE 2	ASP 111
N	ALA 6	MET 391

There are 28 helices in PDB entry 8ZR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	B	84	88	Right-handed 310
Helix 5	AA5	D	28	34	Right-handed alpha
Helix 6	AA6	D	66	70	Right-handed 310
Helix 7	AA7	D	387	391	Right-handed 310
Helix 8	AA8	F	28	32	Right-handed 310
Helix 9	AA9	F	62	65	Right-handed 310
Helix 10	AB1	F	103	107	Right-handed 310
Helix 11	AB2	G	84	88	Right-handed 310
Helix 12	AB3	H	28	34	Right-handed alpha
Helix 13	AB4	H	66	70	Right-handed 310
Helix 14	AB5	H	387	391	Right-handed 310
Helix 15	AB6	I	28	32	Right-handed 310
Helix 16	AB7	I	62	65	Right-handed 310
Helix 17	AB8	I	103	107	Right-handed 310
Helix 18	AB9	J	84	88	Right-handed 310
Helix 19	AC1	K	28	34	Right-handed alpha
Helix 20	AC2	K	66	70	Right-handed 310
Helix 21	AC3	K	387	391	Right-handed 310
Helix 22	AC4	L	28	32	Right-handed 310
Helix 23	AC5	L	62	65	Right-handed 310
Helix 24	AC6	L	103	107	Right-handed 310
Helix 25	AC7	M	84	88	Right-handed 310
Helix 26	AC8	N	28	34	Right-handed alpha
Helix 27	AC9	N	66	70	Right-handed 310
Helix 28	AD1	N	387	391	Right-handed 310

There are 52 sheets in PDB entry 8ZR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	34	39	anti-parallel
Strand 4	A	92	98	anti-parallel
Strand 5	A	124	125	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	34	39	anti-parallel
Strand 4	A	92	98	anti-parallel
Strand 5	A	129	131	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	75	80	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	108	111	parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	38	43	anti-parallel
Strand 5	B	50	54	anti-parallel
Strand 6	B	58	59	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	108	111	parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	103	104	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	26	first strand
Strand 2	D	363	373	anti-parallel
Strand 3	D	342	353	anti-parallel
Strand 4	D	331	337	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	48	first strand
Strand 2	D	53	63	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	96	100	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	108	first strand
Strand 2	D	113	121	anti-parallel
Strand 3	D	124	131	anti-parallel
Strand 4	D	134	140	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	160	168	anti-parallel
Strand 3	D	155	157	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	149	first strand
Strand 2	D	160	168	anti-parallel
Strand 3	D	174	182	anti-parallel
Strand 4	D	185	191	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	207	first strand
Strand 2	D	210	216	anti-parallel
Strand 3	D	225	229	anti-parallel
Strand 4	D	236	240	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	280	first strand
Strand 2	D	283	288	anti-parallel
Strand 3	D	296	303	anti-parallel
Strand 4	D	315	327	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	51	anti-parallel
Strand 3	F	34	39	anti-parallel
Strand 4	F	92	98	anti-parallel
Strand 5	F	124	125	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	51	anti-parallel
Strand 3	F	34	39	anti-parallel
Strand 4	F	92	98	anti-parallel
Strand 5	F	129	131	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	75	80	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	108	111	parallel
Strand 3	G	89	95	anti-parallel
Strand 4	G	38	43	anti-parallel
Strand 5	G	50	54	anti-parallel
Strand 6	G	58	59	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	108	111	parallel
Strand 3	G	89	95	anti-parallel
Strand 4	G	103	104	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	26	first strand
Strand 2	H	363	373	anti-parallel
Strand 3	H	342	353	anti-parallel
Strand 4	H	331	337	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	48	first strand
Strand 2	H	53	63	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	96	100	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	108	first strand
Strand 2	H	113	121	anti-parallel
Strand 3	H	124	131	anti-parallel
Strand 4	H	134	140	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	149	first strand
Strand 2	H	160	168	anti-parallel
Strand 3	H	155	157	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	149	first strand
Strand 2	H	160	168	anti-parallel
Strand 3	H	174	182	anti-parallel
Strand 4	H	185	191	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	200	207	first strand
Strand 2	H	210	216	anti-parallel
Strand 3	H	225	229	anti-parallel
Strand 4	H	236	240	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	277	280	first strand
Strand 2	H	283	288	anti-parallel
Strand 3	H	296	303	anti-parallel
Strand 4	H	315	327	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	92	98	anti-parallel
Strand 5	I	124	125	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	92	98	anti-parallel
Strand 5	I	129	131	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	75	80	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	108	111	parallel
Strand 3	J	89	95	anti-parallel
Strand 4	J	38	43	anti-parallel
Strand 5	J	50	54	anti-parallel
Strand 6	J	58	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	108	111	parallel
Strand 3	J	89	95	anti-parallel
Strand 4	J	103	104	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	20	26	first strand
Strand 2	K	363	373	anti-parallel
Strand 3	K	342	353	anti-parallel
Strand 4	K	331	337	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	39	48	first strand
Strand 2	K	53	63	anti-parallel
Strand 3	K	81	86	anti-parallel
Strand 4	K	96	100	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	103	108	first strand
Strand 2	K	113	121	anti-parallel
Strand 3	K	124	131	anti-parallel
Strand 4	K	134	140	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	148	149	first strand
Strand 2	K	160	168	anti-parallel
Strand 3	K	155	157	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	148	149	first strand
Strand 2	K	160	168	anti-parallel
Strand 3	K	174	182	anti-parallel
Strand 4	K	185	191	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	200	207	first strand
Strand 2	K	210	216	anti-parallel
Strand 3	K	225	229	anti-parallel
Strand 4	K	236	240	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	277	280	first strand
Strand 2	K	283	288	anti-parallel
Strand 3	K	296	303	anti-parallel
Strand 4	K	315	327	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	78	83	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	60	first strand
Strand 2	L	46	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	92	98	anti-parallel
Strand 5	L	124	125	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	60	first strand
Strand 2	L	46	51	anti-parallel
Strand 3	L	34	39	anti-parallel
Strand 4	L	92	98	anti-parallel
Strand 5	L	129	131	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	75	80	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	108	111	parallel
Strand 3	M	89	95	anti-parallel
Strand 4	M	38	43	anti-parallel
Strand 5	M	50	54	anti-parallel
Strand 6	M	58	59	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	108	111	parallel
Strand 3	M	89	95	anti-parallel
Strand 4	M	103	104	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	20	26	first strand
Strand 2	N	363	373	anti-parallel
Strand 3	N	342	353	anti-parallel
Strand 4	N	331	337	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	39	48	first strand
Strand 2	N	53	63	anti-parallel
Strand 3	N	81	86	anti-parallel
Strand 4	N	96	100	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	103	108	first strand
Strand 2	N	113	121	anti-parallel
Strand 3	N	124	131	anti-parallel
Strand 4	N	134	140	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	148	149	first strand
Strand 2	N	160	168	anti-parallel
Strand 3	N	155	157	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	148	149	first strand
Strand 2	N	160	168	anti-parallel
Strand 3	N	174	182	anti-parallel
Strand 4	N	185	191	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	200	207	first strand
Strand 2	N	210	216	anti-parallel
Strand 3	N	225	229	anti-parallel
Strand 4	N	236	240	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	277	280	first strand
Strand 2	N	283	288	anti-parallel
Strand 3	N	296	303	anti-parallel
Strand 4	N	315	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZR4