Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZRE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZRE entry

There are 8 chains in PDB entry 8ZRE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	THR 142
D	MET 1	THR 142
A	ILE 3	THR 142
B	ASP 2	THR 142
L	ASP 1	THR 114
H	GLN 1	SER 121
l	ASP 1	THR 114
h	GLN 1	SER 121

There are 37 helices in PDB entry 8ZRE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	12	19	Right-handed alpha
Helix 2	AA2	C	20	24	Right-handed 310
Helix 3	AA3	C	27	44	Right-handed alpha
Helix 4	AA4	C	51	75	Right-handed alpha
Helix 5	AA5	C	78	90	Right-handed alpha
Helix 6	AA6	C	93	111	Right-handed alpha
Helix 7	AA7	C	112	127	Right-handed alpha
Helix 8	AA8	C	129	133	Right-handed 310
Helix 9	AA9	D	6	10	Right-handed 310
Helix 10	AB1	D	12	18	Right-handed alpha
Helix 11	AB2	D	20	24	Right-handed 310
Helix 12	AB3	D	27	38	Right-handed alpha
Helix 13	AB4	D	50	75	Right-handed alpha
Helix 14	AB5	D	79	91	Right-handed alpha
Helix 15	AB6	D	94	111	Right-handed alpha
Helix 16	AB7	D	112	128	Right-handed alpha
Helix 17	AB8	A	6	10	Right-handed 310
Helix 18	AB9	A	12	18	Right-handed alpha
Helix 19	AC1	A	26	43	Right-handed alpha
Helix 20	AC2	A	50	75	Right-handed alpha
Helix 21	AC3	A	78	92	Right-handed alpha
Helix 22	AC4	A	94	109	Right-handed alpha
Helix 23	AC5	A	111	128	Right-handed alpha
Helix 24	AC6	B	4	10	Right-handed 310
Helix 25	AC7	B	12	18	Right-handed alpha
Helix 26	AC8	B	26	44	Right-handed alpha
Helix 27	AC9	B	49	75	Right-handed alpha
Helix 28	AD1	B	78	91	Right-handed alpha
Helix 29	AD2	B	93	111	Right-handed alpha
Helix 30	AD3	B	111	128	Right-handed alpha
Helix 31	AD4	B	129	133	Right-handed 310
Helix 32	AD5	L	84	88	Right-handed 310
Helix 33	AD6	H	28	32	Right-handed 310
Helix 34	AD7	H	87	91	Right-handed 310
Helix 35	AD8	l	84	88	Right-handed 310
Helix 36	AD9	h	28	32	Right-handed 310
Helix 37	AE1	h	87	91	Right-handed 310

There are 12 sheets in PDB entry 8ZRE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	75	80	anti-parallel
Strand 4	L	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	107	110	parallel
Strand 3	L	90	95	anti-parallel
Strand 4	L	38	43	anti-parallel
Strand 5	L	50	54	anti-parallel
Strand 6	L	58	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	107	110	parallel
Strand 3	L	90	95	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	108	109	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	4	7	first strand
Strand 2	l	19	25	anti-parallel
Strand 3	l	75	80	anti-parallel
Strand 4	l	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	10	12	first strand
Strand 2	l	107	110	parallel
Strand 3	l	90	95	anti-parallel
Strand 4	l	38	43	anti-parallel
Strand 5	l	50	54	anti-parallel
Strand 6	l	58	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	10	12	first strand
Strand 2	l	107	110	parallel
Strand 3	l	90	95	anti-parallel
Strand 4	l	102	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	3	7	first strand
Strand 2	h	18	25	anti-parallel
Strand 3	h	78	83	anti-parallel
Strand 4	h	68	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	10	12	first strand
Strand 2	h	113	117	parallel
Strand 3	h	92	98	anti-parallel
Strand 4	h	34	39	anti-parallel
Strand 5	h	46	51	anti-parallel
Strand 6	h	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	10	12	first strand
Strand 2	h	113	117	parallel
Strand 3	h	92	98	anti-parallel
Strand 4	h	108	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZRE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZRE