Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZRP entry

There are 5 chains in PDB entry 8ZRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 32	LEU 707
B	ALA 24	LEU 574
C	ALA 32	PRO 709
D	ALA 24	PHE 575
E	ASN 25	LEU 576

There are 48 helices in PDB entry 8ZRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	44	Right-handed alpha
Helix 2	AA2	A	111	115	Right-handed 310
Helix 3	AA3	A	247	258	Right-handed alpha
Helix 4	AA4	A	259	263	Right-handed 310
Helix 5	AA5	A	270	291	Right-handed alpha
Helix 6	AA6	A	301	329	Right-handed alpha
Helix 7	AA7	A	338	345	Right-handed alpha
Helix 8	AA8	A	348	353	Right-handed alpha
Helix 9	AA9	A	651	706	Right-handed alpha
Helix 10	AB1	B	26	35	Right-handed alpha
Helix 11	AB2	B	234	239	Right-handed alpha
Helix 12	AB3	B	240	249	Right-handed alpha
Helix 13	AB4	B	250	256	Right-handed 310
Helix 14	AB5	B	262	283	Right-handed alpha
Helix 15	AB6	B	293	321	Right-handed alpha
Helix 16	AB7	B	332	337	Right-handed alpha
Helix 17	AB8	B	340	345	Right-handed alpha
Helix 18	AB9	B	520	574	Right-handed alpha
Helix 19	AC1	C	33	42	Right-handed alpha
Helix 20	AC2	C	111	115	Right-handed 310
Helix 21	AC3	C	241	246	Right-handed alpha
Helix 22	AC4	C	248	257	Right-handed alpha
Helix 23	AC5	C	258	264	Right-handed 310
Helix 24	AC6	C	272	291	Right-handed alpha
Helix 25	AC7	C	305	326	Right-handed alpha
Helix 26	AC8	C	338	346	Right-handed alpha
Helix 27	AC9	C	348	353	Right-handed alpha
Helix 28	AD1	C	651	706	Right-handed alpha
Helix 29	AD2	D	25	36	Right-handed alpha
Helix 30	AD3	D	108	110	Right-handed 310
Helix 31	AD4	D	159	162	Right-handed 310
Helix 32	AD5	D	234	239	Right-handed alpha
Helix 33	AD6	D	239	248	Right-handed alpha
Helix 34	AD7	D	249	256	Right-handed 310
Helix 35	AD8	D	266	285	Right-handed alpha
Helix 36	AD9	D	293	321	Right-handed alpha
Helix 37	AE1	D	330	337	Right-handed alpha
Helix 38	AE2	D	339	345	Right-handed alpha
Helix 39	AE3	D	520	575	Right-handed alpha
Helix 40	AE4	E	26	36	Right-handed alpha
Helix 41	AE5	E	233	238	Right-handed alpha
Helix 42	AE6	E	239	250	Right-handed alpha
Helix 43	AE7	E	251	256	Right-handed 310
Helix 44	AE8	E	262	285	Right-handed alpha
Helix 45	AE9	E	293	321	Right-handed alpha
Helix 46	AF1	E	330	338	Right-handed alpha
Helix 47	AF2	E	340	345	Right-handed alpha
Helix 48	AF3	E	520	571	Right-handed alpha

There are 22 sheets in PDB entry 8ZRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	79	91	anti-parallel
Strand 3	A	151	157	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	79	91	anti-parallel
Strand 3	A	59	69	anti-parallel
Strand 4	A	186	190	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	169	178	anti-parallel
Strand 3	A	226	238	anti-parallel
Strand 4	A	206	210	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	169	178	anti-parallel
Strand 3	A	226	238	anti-parallel
Strand 4	A	213	219	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	152	first strand
Strand 2	B	74	84	anti-parallel
Strand 3	B	57	69	anti-parallel
Strand 4	B	184	185	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	164	173	anti-parallel
Strand 3	B	220	230	anti-parallel
Strand 4	B	201	205	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	117	first strand
Strand 2	B	164	173	anti-parallel
Strand 3	B	220	230	anti-parallel
Strand 4	B	208	212	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	141	142	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	148	first strand
Strand 2	C	87	91	anti-parallel
Strand 3	C	61	64	anti-parallel
Strand 4	C	188	190	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	74	first strand
Strand 2	C	79	85	anti-parallel
Strand 3	C	151	157	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	140	141	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	172	178	anti-parallel
Strand 3	C	227	234	anti-parallel
Strand 4	C	213	218	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	236	238	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	184	185	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	68	first strand
Strand 2	D	74	80	anti-parallel
Strand 3	D	146	152	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	106	first strand
Strand 2	D	132	136	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	117	first strand
Strand 2	D	164	173	anti-parallel
Strand 3	D	220	229	anti-parallel
Strand 4	D	208	212	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	134	136	anti-parallel
Strand 3	E	140	143	anti-parallel
Strand 4	E	74	86	anti-parallel
Strand 5	E	146	152	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	134	136	anti-parallel
Strand 3	E	140	143	anti-parallel
Strand 4	E	74	86	anti-parallel
Strand 5	E	57	67	anti-parallel
Strand 6	E	184	185	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	117	first strand
Strand 2	E	164	173	anti-parallel
Strand 3	E	220	229	anti-parallel
Strand 4	E	202	205	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	117	first strand
Strand 2	E	164	173	anti-parallel
Strand 3	E	220	229	anti-parallel
Strand 4	E	208	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZRP