Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZSB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZSB entry

There are 2 chains in PDB entry 8ZSB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5ALA 422
B
 GLY 5ALA 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8ZSB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 33Right-handed alpha
Helix 2
AA2
A
35 61Right-handed alpha
Helix 3
AA3
A
74 106Right-handed alpha
Helix 4
AA4
A
112 134Right-handed alpha
Helix 5
AA5
A
239 273Right-handed alpha
Helix 6
AA6
A
310 315Right-handed alpha
Helix 7
AA7
A
315 343Right-handed alpha
Helix 8
AA8
A
352 363Right-handed alpha
Helix 9
AA9
A
392 410Right-handed alpha
Helix 10
AB1
B
6 33Right-handed alpha
Helix 11
AB2
B
35 61Right-handed alpha
Helix 12
AB3
B
74 106Right-handed alpha
Helix 13
AB4
B
112 134Right-handed alpha
Helix 14
AB5
B
239 273Right-handed alpha
Helix 15
AB6
B
310 315Right-handed alpha
Helix 16
AB7
B
315 343Right-handed alpha
Helix 17
AB8
B
352 363Right-handed alpha
Helix 18
AB9
B
392 410Right-handed alpha
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There are 2 sheets in PDB entry 8ZSB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
381 390anti-parallel
Strand 3
A
414 421parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 378first strand
Strand 2
B
381 388anti-parallel
Strand 3
B
414 419parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il