Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZV5 entry

There are 3 chains in PDB entry 8ZV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 56	GLU 728
B	ASP 293	LEU 539
F	ALA 32	HIS 292

There are 47 helices in PDB entry 8ZV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	86	Right-handed alpha
Helix 2	AA2	A	95	99	Right-handed 310
Helix 3	AA3	A	100	106	Right-handed alpha
Helix 4	AA4	A	116	121	Right-handed alpha
Helix 5	AA5	A	123	135	Right-handed alpha
Helix 6	AA6	A	149	159	Right-handed alpha
Helix 7	AA7	A	167	176	Right-handed alpha
Helix 8	AA8	A	176	187	Right-handed alpha
Helix 9	AA9	A	201	213	Right-handed alpha
Helix 10	AB1	A	234	253	Right-handed alpha
Helix 11	AB2	A	309	327	Right-handed alpha
Helix 12	AB3	A	358	366	Right-handed alpha
Helix 13	AB4	A	368	379	Right-handed alpha
Helix 14	AB5	A	458	472	Right-handed alpha
Helix 15	AB6	A	481	491	Right-handed alpha
Helix 16	AB7	A	491	497	Right-handed alpha
Helix 17	AB8	A	502	507	Right-handed alpha
Helix 18	AB9	A	518	541	Right-handed alpha
Helix 19	AC1	A	641	647	Right-handed alpha
Helix 20	AC2	A	648	650	Right-handed 310
Helix 21	AC3	B	299	303	Right-handed 310
Helix 22	AC4	B	315	324	Right-handed alpha
Helix 23	AC5	B	325	327	Right-handed 310
Helix 24	AC6	B	360	365	Right-handed 310
Helix 25	AC7	B	367	384	Right-handed alpha
Helix 26	AC8	B	400	406	Right-handed alpha
Helix 27	AC9	B	407	421	Right-handed alpha
Helix 28	AD1	B	437	442	Right-handed alpha
Helix 29	AD2	B	444	448	Right-handed 310
Helix 30	AD3	B	464	473	Right-handed alpha
Helix 31	AD4	B	478	491	Right-handed alpha
Helix 32	AD5	B	493	499	Right-handed alpha
Helix 33	AD6	B	507	509	Right-handed 310
Helix 34	AD7	B	510	522	Right-handed alpha
Helix 35	AD8	B	523	525	Right-handed 310
Helix 36	AD9	F	34	48	Right-handed alpha
Helix 37	AE1	F	51	61	Right-handed alpha
Helix 38	AE2	F	65	74	Right-handed alpha
Helix 39	AE3	F	97	101	Right-handed 310
Helix 40	AE4	F	128	132	Right-handed 310
Helix 41	AE5	F	134	152	Right-handed alpha
Helix 42	AE6	F	169	186	Right-handed alpha
Helix 43	AE7	F	205	210	Right-handed alpha
Helix 44	AE8	F	227	235	Right-handed alpha
Helix 45	AE9	F	240	246	Right-handed alpha
Helix 46	AF1	F	246	253	Right-handed alpha
Helix 47	AF2	F	263	276	Right-handed alpha

There are 14 sheets in PDB entry 8ZV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	88	91	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	162	163	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	259	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	332	339	anti-parallel
Strand 4	A	347	351	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	288	294	anti-parallel
Strand 4	A	297	302	anti-parallel
Strand 5	A	394	401	anti-parallel
Strand 6	A	448	456	anti-parallel
Strand 7	A	429	433	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	411	412	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	440	441	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	474	475	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	564	first strand
Strand 2	A	569	577	anti-parallel
Strand 3	A	580	585	anti-parallel
Strand 4	A	588	593	anti-parallel
Strand 5	A	602	607	anti-parallel
Strand 6	A	610	619	anti-parallel
Strand 7	A	624	629	anti-parallel
Strand 8	A	632	640	anti-parallel
Strand 9	A	558	564	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	673	first strand
Strand 2	A	686	691	anti-parallel
Strand 3	A	696	700	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	710	first strand
Strand 2	A	725	726	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	340	347	anti-parallel
Strand 3	B	350	357	anti-parallel
Strand 4	B	388	392	parallel
Strand 5	B	426	430	parallel
Strand 6	B	451	454	parallel
Strand 7	B	504	505	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	82	first strand
Strand 2	F	107	114	anti-parallel
Strand 3	F	117	124	anti-parallel
Strand 4	F	155	159	parallel
Strand 5	F	192	196	parallel
Strand 6	F	213	217	parallel
Strand 7	F	259	261	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	201	first strand
Strand 2	F	222	224	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZV5