Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZVD entry

There is 1 chain in PDB entry 8ZVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8ZVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 44Right-handed alpha
Helix 2
AA2
A
67 75Right-handed alpha
Helix 3
AA3
A
84 86Right-handed 310
Helix 4
AA4
A
91 94Right-handed 310
Helix 5
AA5
A
95 106Right-handed alpha
Helix 6
AA6
A
108 110Right-handed 310
Helix 7
AA7
A
118 128Right-handed alpha
Helix 8
AA8
A
150 162Right-handed alpha
Helix 9
AA9
A
210 225Right-handed alpha
Helix 10
AB1
A
246 264Right-handed alpha
Helix 11
AB2
A
293 298Right-handed alpha
Helix 12
AB3
A
337 350Right-handed alpha
Helix 13
AB4
A
385 387Right-handed 310
Helix 14
AB5
A
397 401Right-handed 310
Helix 15
AB6
A
407 419Right-handed alpha
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There are 5 sheets in PDB entry 8ZVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
47 52parallel
Strand 3
A
5 8parallel
Strand 4
A
112 116parallel
Strand 5
A
131 135parallel
Strand 6
A
147 148parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
63 66anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
178 186anti-parallel
Strand 3
A
353 362parallel
Strand 4
A
326 334parallel
Strand 5
A
231 236parallel
Strand 6
A
266 268parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
300 302anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 372first strand
Strand 2
A
389 395anti-parallel
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