Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZVM entry

There are 2 chains in PDB entry 8ZVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30SER 463
B
 SER 30SER 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8ZVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 56Right-handed alpha
Helix 2
AA2
A
65 70Right-handed alpha
Helix 3
AA3
A
98 105Right-handed alpha
Helix 4
AA4
A
115 126Right-handed alpha
Helix 5
AA5
A
130 144Right-handed alpha
Helix 6
AA6
A
148 158Right-handed alpha
Helix 7
AA7
A
163 175Right-handed alpha
Helix 8
AA8
A
176 178Right-handed 310
Helix 9
AA9
A
179 187Right-handed alpha
Helix 10
AB1
A
190 192Right-handed 310
Helix 11
AB2
A
193 222Right-handed alpha
Helix 12
AB3
A
235 245Right-handed alpha
Helix 13
AB4
A
248 262Right-handed alpha
Helix 14
AB5
A
269 281Right-handed alpha
Helix 15
AB6
A
284 297Right-handed alpha
Helix 16
AB7
A
298 303Right-handed alpha
Helix 17
AB8
A
303 316Right-handed alpha
Helix 18
AB9
A
324 338Right-handed alpha
Helix 19
AC1
A
354 368Right-handed alpha
Helix 20
AC2
A
371 384Right-handed alpha
Helix 21
AC3
A
401 412Right-handed alpha
Helix 22
AC4
A
416 418Right-handed 310
Helix 23
AC5
A
419 442Right-handed alpha
Helix 24
AC6
A
453 462Right-handed alpha
Helix 25
AC7
B
32 56Right-handed alpha
Helix 26
AC8
B
65 70Right-handed alpha
Helix 27
AC9
B
97 105Right-handed alpha
Helix 28
AD1
B
115 126Right-handed alpha
Helix 29
AD2
B
130 143Right-handed alpha
Helix 30
AD3
B
148 157Right-handed alpha
Helix 31
AD4
B
163 175Right-handed alpha
Helix 32
AD5
B
176 178Right-handed 310
Helix 33
AD6
B
179 187Right-handed alpha
Helix 34
AD7
B
190 192Right-handed 310
Helix 35
AD8
B
193 222Right-handed alpha
Helix 36
AD9
B
235 245Right-handed alpha
Helix 37
AE1
B
248 262Right-handed alpha
Helix 38
AE2
B
269 280Right-handed alpha
Helix 39
AE3
B
284 297Right-handed alpha
Helix 40
AE4
B
303 319Right-handed alpha
Helix 41
AE5
B
324 339Right-handed alpha
Helix 42
AE6
B
354 368Right-handed alpha
Helix 43
AE7
B
371 384Right-handed alpha
Helix 44
AE8
B
385 387Right-handed 310
Helix 45
AE9
B
401 412Right-handed alpha
Helix 46
AF1
B
416 418Right-handed 310
Helix 47
AF2
B
419 442Right-handed alpha
Helix 48
AF3
B
453 463Right-handed alpha
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There are 5 sheets in PDB entry 8ZVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
B
59 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
B
450 452parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
96 97anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 452first strand
Strand 2
B
76 79parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
90 93anti-parallel
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