Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZVQ entry

There are 2 chains in PDB entry 8ZVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4PRO 752
B
 ARG 4PRO 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8ZVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
28 61Right-handed alpha
Helix 3
3
A
71 96Right-handed alpha
Helix 4
4
A
104 134Right-handed alpha
Helix 5
5
A
146 158Right-handed alpha
Helix 6
6
A
162 165Right-handed alpha
Helix 7
7
A
175 197Right-handed alpha
Helix 8
9
A
219 232Right-handed alpha
Helix 9
10
A
235 246Right-handed alpha
Helix 10
11
A
248 256Right-handed alpha
Helix 11
12
A
316 321Right-handed alpha
Helix 12
13
A
359 373Right-handed alpha
Helix 13
14
A
392 406Right-handed alpha
Helix 14
15
A
424 439Right-handed alpha
Helix 15
16
A
464 469Right-handed 310
Helix 16
17
A
476 486Right-handed alpha
Helix 17
18
A
662 665Right-handed 310
Helix 18
19
A
671 673Right-handed 310
Helix 19
20
A
676 681Right-handed alpha
Helix 20
21
A
696 708Right-handed alpha
Helix 21
22
A
725 728Right-handed 310
Helix 22
23
A
733 750Right-handed alpha
Helix 23
24
B
5 23Right-handed alpha
Helix 24
25
B
28 61Right-handed alpha
Helix 25
26
B
71 96Right-handed alpha
Helix 26
27
B
104 134Right-handed alpha
Helix 27
28
B
146 158Right-handed alpha
Helix 28
29
B
162 165Right-handed alpha
Helix 29
30
B
175 197Right-handed alpha
Helix 30
32
B
219 232Right-handed alpha
Helix 31
33
B
235 246Right-handed alpha
Helix 32
34
B
248 256Right-handed alpha
Helix 33
35
B
316 321Right-handed alpha
Helix 34
36
B
359 373Right-handed alpha
Helix 35
37
B
392 406Right-handed alpha
Helix 36
38
B
424 439Right-handed alpha
Helix 37
39
B
464 469Right-handed 310
Helix 38
40
B
476 486Right-handed alpha
Helix 39
41
B
662 665Right-handed 310
Helix 40
42
B
671 673Right-handed 310
Helix 41
43
B
676 681Right-handed alpha
Helix 42
44
B
696 708Right-handed alpha
Helix 43
45
B
725 728Right-handed 310
Helix 44
46
B
733 750Right-handed alpha
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There are 8 sheets in PDB entry 8ZVQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 269first strand
Strand 2
A
300 306anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
285 288anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 380first strand
Strand 2
A
344 349parallel
Strand 3
A
417 423parallel
Strand 4
A
447 451parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
685 690first strand
Strand 2
A
713 718parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 269first strand
Strand 2
B
300 306anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
285 288anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 380first strand
Strand 2
B
344 349parallel
Strand 3
B
417 423parallel
Strand 4
B
447 451parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
685 690first strand
Strand 2
B
713 718parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il