Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZVY entry

There are 4 chains in PDB entry 8ZVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 35ILE 1103
B
 GLU 36THR 1102
C
 GLU 131ALA 140
D
 PRO 128ALA 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8ZVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 50Right-handed alpha
Helix 2
AA2
A
56 85Right-handed alpha
Helix 3
AA3
A
91 103Right-handed alpha
Helix 4
AA4
A
104 123Right-handed alpha
Helix 5
AA5
A
1018 1023Right-handed 310
Helix 6
AA6
A
1027 1038Right-handed alpha
Helix 7
AA7
A
1046 1074Right-handed alpha
Helix 8
AA8
A
1080 1090Right-handed alpha
Helix 9
AA9
A
1091 1101Right-handed alpha
Helix 10
AB1
B
38 50Right-handed alpha
Helix 11
AB2
B
56 83Right-handed alpha
Helix 12
AB3
B
91 103Right-handed alpha
Helix 13
AB4
B
105 123Right-handed alpha
Helix 14
AB5
B
1017 1023Right-handed alpha
Helix 15
AB6
B
1027 1038Right-handed alpha
Helix 16
AB7
B
1046 1074Right-handed alpha
Helix 17
AB8
B
1080 1090Right-handed alpha
Helix 18
AB9
B
1091 1099Right-handed alpha
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There are 4 sheets in PDB entry 8ZVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
1078 1079parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
1043 1044parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
1078 1079parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
1043 1044parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il