Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZW0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZW0 entry

There are 5 chains in PDB entry 8ZW0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 393
B	GLU 3	ASN 340
D	PRO 4	PHE 335
G	THR 6	ARG 62
N	GLN 1	SER 128

There are 30 helices in PDB entry 8ZW0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	39	Right-handed alpha
Helix 2	AA2	A	52	62	Right-handed alpha
Helix 3	AA3	A	233	239	Right-handed 310
Helix 4	AA4	A	251	253	Right-handed 310
Helix 5	AA5	A	264	279	Right-handed alpha
Helix 6	AA6	A	280	283	Right-handed 310
Helix 7	AA7	A	293	303	Right-handed alpha
Helix 8	AA8	A	307	312	Right-handed alpha
Helix 9	AA9	A	313	318	Right-handed 310
Helix 10	AB1	A	331	352	Right-handed alpha
Helix 11	AB2	A	370	388	Right-handed alpha
Helix 12	AB3	A	389	391	Right-handed 310
Helix 13	AB4	B	4	25	Right-handed alpha
Helix 14	AB5	B	29	35	Right-handed alpha
Helix 15	AB6	D	20	47	Right-handed alpha
Helix 16	AB7	D	59	90	Right-handed alpha
Helix 17	AB8	D	92	97	Right-handed alpha
Helix 18	AB9	D	105	136	Right-handed alpha
Helix 19	AC1	D	136	144	Right-handed alpha
Helix 20	AC2	D	145	165	Right-handed alpha
Helix 21	AC3	D	166	170	Right-handed 310
Helix 22	AC4	D	193	234	Right-handed alpha
Helix 23	AC5	D	259	291	Right-handed alpha
Helix 24	AC6	D	297	313	Right-handed alpha
Helix 25	AC7	D	313	324	Right-handed alpha
Helix 26	AC8	D	328	333	Right-handed alpha
Helix 27	AC9	G	7	24	Right-handed alpha
Helix 28	AD1	G	29	44	Right-handed alpha
Helix 29	AD2	N	28	32	Right-handed 310
Helix 30	AD3	N	87	91	Right-handed 310

There are 11 sheets in PDB entry 8ZW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	362	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	183	185	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZW0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZW0