Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZWD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZWD entry

There are 4 chains in PDB entry 8ZWD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	GLU 384
D	MET 1	GLU 384
H	MET 1	GLU 384
J	MET 1	LEU 221

There are204 helices in PDB entry 8ZWD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	16	19	Right-handed 310
Helix 2	AA2	B	20	28	Right-handed alpha
Helix 3	AA3	B	38	45	Right-handed alpha
Helix 4	AA4	B	45	57	Right-handed alpha
Helix 5	AA5	B	72	87	Right-handed alpha
Helix 6	AA6	B	96	113	Right-handed alpha
Helix 7	AA7	B	115	120	Right-handed 310
Helix 8	AA8	B	142	146	Right-handed 310
Helix 9	AA9	B	165	168	Right-handed 310
Helix 10	AB1	B	176	180	Right-handed 310
Helix 11	AB2	B	183	204	Right-handed alpha
Helix 12	AB3	B	208	232	Right-handed alpha
Helix 13	AB4	B	235	257	Right-handed alpha
Helix 14	AB5	B	259	273	Right-handed alpha
Helix 15	AB6	B	275	292	Right-handed alpha
Helix 16	AB7	B	295	306	Right-handed alpha
Helix 17	AB8	B	314	333	Right-handed alpha
Helix 18	AB9	B	345	347	Right-handed 310
Helix 19	AC1	B	348	358	Right-handed alpha
Helix 20	AC2	B	360	365	Right-handed alpha
Helix 21	AC3	B	370	381	Right-handed alpha
Helix 22	AC4	D	16	19	Right-handed 310
Helix 23	AC5	D	20	28	Right-handed alpha
Helix 24	AC6	D	38	44	Right-handed alpha
Helix 25	AC7	D	45	57	Right-handed alpha
Helix 26	AC8	D	72	87	Right-handed alpha
Helix 27	AC9	D	96	113	Right-handed alpha
Helix 28	AD1	D	116	120	Right-handed 310
Helix 29	AD2	D	176	180	Right-handed 310
Helix 30	AD3	D	183	203	Right-handed alpha
Helix 31	AD4	D	208	232	Right-handed alpha
Helix 32	AD5	D	235	257	Right-handed alpha
Helix 33	AD6	D	259	273	Right-handed alpha
Helix 34	AD7	D	275	292	Right-handed alpha
Helix 35	AD8	D	295	306	Right-handed alpha
Helix 36	AD9	D	314	333	Right-handed alpha
Helix 37	AE1	D	338	343	Right-handed alpha
Helix 38	AE2	D	345	347	Right-handed 310
Helix 39	AE3	D	348	358	Right-handed alpha
Helix 40	AE4	D	360	365	Right-handed alpha
Helix 41	AE5	D	370	383	Right-handed alpha
Helix 42	AE6	H	16	19	Right-handed 310
Helix 43	AE7	H	20	29	Right-handed alpha
Helix 44	AE8	H	38	44	Right-handed alpha
Helix 45	AE9	H	45	56	Right-handed alpha
Helix 46	AF1	H	72	86	Right-handed alpha
Helix 47	AF2	H	96	112	Right-handed alpha
Helix 48	AF3	H	115	120	Right-handed 310
Helix 49	AF4	H	142	146	Right-handed 310
Helix 50	AF5	H	165	168	Right-handed 310
Helix 51	AF6	H	176	180	Right-handed 310
Helix 52	AF7	H	183	204	Right-handed alpha
Helix 53	AF8	H	208	232	Right-handed alpha
Helix 54	AF9	H	235	257	Right-handed alpha
Helix 55	AG1	H	259	273	Right-handed alpha
Helix 56	AG2	H	275	292	Right-handed alpha
Helix 57	AG3	H	295	306	Right-handed alpha
Helix 58	AG4	H	314	333	Right-handed alpha
Helix 59	AG5	H	345	347	Right-handed 310
Helix 60	AG6	H	348	358	Right-handed alpha
Helix 61	AG7	H	360	365	Right-handed alpha
Helix 62	AG8	H	370	381	Right-handed alpha
Helix 63	AG9	J	16	19	Right-handed 310
Helix 64	AH1	J	20	29	Right-handed alpha
Helix 65	AH2	J	38	45	Right-handed alpha
Helix 66	AH3	J	45	57	Right-handed alpha
Helix 67	AH4	J	72	86	Right-handed alpha
Helix 68	AH5	J	96	109	Right-handed alpha
Helix 69	AH6	J	142	146	Right-handed 310
Helix 70	AH7	J	165	168	Right-handed 310
Helix 71	AH8	J	176	180	Right-handed 310
Helix 72	AH9	J	183	204	Right-handed alpha
Helix 73	AI1	J	208	232	Right-handed alpha
Helix 74	AI2	J	235	255	Right-handed alpha
Helix 75	AI3	J	259	273	Right-handed alpha
Helix 76	AI4	J	275	292	Right-handed alpha
Helix 77	AI5	J	295	306	Right-handed alpha
Helix 78	AI6	J	314	333	Right-handed alpha
Helix 79	AI7	J	348	358	Right-handed alpha
Helix 80	AI8	J	360	365	Right-handed alpha
Helix 81	AI9	J	370	381	Right-handed alpha
Helix 82	AJ1	E	16	19	Right-handed 310
Helix 83	AJ2	E	20	28	Right-handed alpha
Helix 84	AJ3	E	39	45	Right-handed alpha
Helix 85	AJ4	E	45	57	Right-handed alpha
Helix 86	AJ5	E	72	86	Right-handed alpha
Helix 87	AJ6	E	96	113	Right-handed alpha
Helix 88	AJ7	E	115	120	Right-handed 310
Helix 89	AJ8	E	165	168	Right-handed 310
Helix 90	AJ9	E	176	180	Right-handed 310
Helix 91	AK1	E	183	203	Right-handed alpha
Helix 92	AK2	E	208	232	Right-handed alpha
Helix 93	AK3	E	235	256	Right-handed alpha
Helix 94	AK4	E	259	273	Right-handed alpha
Helix 95	AK5	E	275	292	Right-handed alpha
Helix 96	AK6	E	295	306	Right-handed alpha
Helix 97	AK7	E	314	333	Right-handed alpha
Helix 98	AK8	E	345	347	Right-handed 310
Helix 99	AK9	E	348	358	Right-handed alpha
Helix 100	AL1	E	359	364	Right-handed 310
Helix 101	AL2	E	370	381	Right-handed alpha
Helix 102	AL3	G	16	19	Right-handed 310
Helix 103	AL4	G	20	29	Right-handed alpha
Helix 104	AL5	G	46	56	Right-handed alpha
Helix 105	AL6	G	77	86	Right-handed alpha
Helix 106	AL7	G	96	104	Right-handed alpha
Helix 107	AL8	G	142	146	Right-handed 310
Helix 108	AL9	G	164	168	Right-handed 310
Helix 109	AM1	G	176	180	Right-handed 310
Helix 110	AM2	G	183	203	Right-handed alpha
Helix 111	AM3	G	208	232	Right-handed alpha
Helix 112	AM4	G	235	257	Right-handed alpha
Helix 113	AM5	G	259	273	Right-handed alpha
Helix 114	AM6	G	275	292	Right-handed alpha
Helix 115	AM7	G	295	306	Right-handed alpha
Helix 116	AM8	G	314	333	Right-handed alpha
Helix 117	AM9	G	338	343	Right-handed 310
Helix 118	AN1	G	345	347	Right-handed 310
Helix 119	AN2	G	348	359	Right-handed alpha
Helix 120	AN3	G	360	365	Right-handed alpha
Helix 121	AN4	G	370	381	Right-handed alpha
Helix 122	AN5	F	16	19	Right-handed 310
Helix 123	AN6	F	20	29	Right-handed alpha
Helix 124	AN7	F	38	44	Right-handed alpha
Helix 125	AN8	F	45	58	Right-handed alpha
Helix 126	AN9	F	72	86	Right-handed alpha
Helix 127	AO1	F	96	113	Right-handed alpha
Helix 128	AO2	F	116	120	Right-handed 310
Helix 129	AO3	F	142	146	Right-handed 310
Helix 130	AO4	F	165	168	Right-handed 310
Helix 131	AO5	F	176	180	Right-handed 310
Helix 132	AO6	F	183	204	Right-handed alpha
Helix 133	AO7	F	208	232	Right-handed alpha
Helix 134	AO8	F	235	257	Right-handed alpha
Helix 135	AO9	F	259	273	Right-handed alpha
Helix 136	AP1	F	275	291	Right-handed alpha
Helix 137	AP2	F	292	294	Right-handed 310
Helix 138	AP3	F	295	306	Right-handed alpha
Helix 139	AP4	F	314	334	Right-handed alpha
Helix 140	AP5	F	345	347	Right-handed 310
Helix 141	AP6	F	348	358	Right-handed alpha
Helix 142	AP7	F	359	364	Right-handed 310
Helix 143	AP8	F	370	381	Right-handed alpha
Helix 144	AP9	C	16	19	Right-handed 310
Helix 145	AQ1	C	20	28	Right-handed alpha
Helix 146	AQ2	C	39	44	Right-handed alpha
Helix 147	AQ3	C	45	57	Right-handed alpha
Helix 148	AQ4	C	72	86	Right-handed alpha
Helix 149	AQ5	C	96	113	Right-handed alpha
Helix 150	AQ6	C	115	119	Right-handed 310
Helix 151	AQ7	C	165	168	Right-handed 310
Helix 152	AQ8	C	176	179	Right-handed 310
Helix 153	AQ9	C	183	204	Right-handed alpha
Helix 154	AR1	C	208	232	Right-handed alpha
Helix 155	AR2	C	235	256	Right-handed alpha
Helix 156	AR3	C	259	273	Right-handed alpha
Helix 157	AR4	C	275	292	Right-handed alpha
Helix 158	AR5	C	295	306	Right-handed alpha
Helix 159	AR6	C	314	333	Right-handed alpha
Helix 160	AR7	C	338	343	Right-handed alpha
Helix 161	AR8	C	348	358	Right-handed alpha
Helix 162	AR9	C	359	364	Right-handed 310
Helix 163	AS1	C	370	381	Right-handed alpha
Helix 164	AS2	A	16	19	Right-handed 310
Helix 165	AS3	A	20	29	Right-handed alpha
Helix 166	AS4	A	39	44	Right-handed alpha
Helix 167	AS5	A	45	58	Right-handed alpha
Helix 168	AS6	A	72	86	Right-handed alpha
Helix 169	AS7	A	96	113	Right-handed alpha
Helix 170	AS8	A	115	120	Right-handed 310
Helix 171	AS9	A	142	146	Right-handed 310
Helix 172	AT1	A	165	168	Right-handed 310
Helix 173	AT2	A	176	179	Right-handed 310
Helix 174	AT3	A	183	203	Right-handed alpha
Helix 175	AT4	A	208	232	Right-handed alpha
Helix 176	AT5	A	235	257	Right-handed alpha
Helix 177	AT6	A	259	273	Right-handed alpha
Helix 178	AT7	A	275	292	Right-handed alpha
Helix 179	AT8	A	295	306	Right-handed alpha
Helix 180	AT9	A	314	333	Right-handed alpha
Helix 181	AU1	A	338	343	Right-handed 310
Helix 182	AU2	A	348	358	Right-handed alpha
Helix 183	AU3	A	360	365	Right-handed alpha
Helix 184	AU4	A	370	383	Right-handed alpha
Helix 185	AU5	I	16	19	Right-handed 310
Helix 186	AU6	I	20	29	Right-handed alpha
Helix 187	AU7	I	39	45	Right-handed alpha
Helix 188	AU8	I	45	57	Right-handed alpha
Helix 189	AU9	I	72	86	Right-handed alpha
Helix 190	AV1	I	96	113	Right-handed alpha
Helix 191	AV2	I	115	120	Right-handed 310
Helix 192	AV3	I	176	180	Right-handed 310
Helix 193	AV4	I	183	203	Right-handed alpha
Helix 194	AV5	I	208	232	Right-handed alpha
Helix 195	AV6	I	235	257	Right-handed alpha
Helix 196	AV7	I	259	273	Right-handed alpha
Helix 197	AV8	I	275	292	Right-handed alpha
Helix 198	AV9	I	295	306	Right-handed alpha
Helix 199	AW1	I	314	333	Right-handed alpha
Helix 200	AW2	I	339	343	Right-handed 310
Helix 201	AW3	I	345	347	Right-handed 310
Helix 202	AW4	I	348	359	Right-handed alpha
Helix 203	AW5	I	360	365	Right-handed 310
Helix 204	AW6	I	370	383	Right-handed alpha

There are 19 sheets in PDB entry 8ZWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	D	10	13	anti-parallel
Strand 3	D	171	174	parallel
Strand 4	D	132	136	parallel
Strand 5	D	90	95	parallel
Strand 6	D	32	36	parallel
Strand 7	D	60	64	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	64	first strand
Strand 2	B	32	36	parallel
Strand 3	B	90	95	parallel
Strand 4	B	132	136	parallel
Strand 5	B	171	174	parallel
Strand 6	B	10	13	parallel
Strand 7	D	3	6	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	158	163	parallel
Strand 3	B	148	153	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	158	163	parallel
Strand 3	D	148	153	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	J	10	13	anti-parallel
Strand 3	J	171	174	parallel
Strand 4	J	132	136	parallel
Strand 5	J	90	95	parallel
Strand 6	J	32	36	parallel
Strand 7	J	60	64	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	33	36	parallel
Strand 3	H	90	95	parallel
Strand 4	H	132	136	parallel
Strand 5	H	171	174	parallel
Strand 6	H	10	13	parallel
Strand 7	J	3	6	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	121	122	first strand
Strand 2	H	158	163	parallel
Strand 3	H	148	153	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	148	151	first strand
Strand 2	J	160	163	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	I	10	13	anti-parallel
Strand 3	I	171	174	parallel
Strand 4	I	132	136	parallel
Strand 5	I	90	95	parallel
Strand 6	I	32	38	parallel
Strand 7	I	60	67	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	64	first strand
Strand 2	E	32	36	parallel
Strand 3	E	90	95	parallel
Strand 4	E	132	136	parallel
Strand 5	E	171	174	parallel
Strand 6	E	10	13	parallel
Strand 7	I	3	6	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	122	first strand
Strand 2	E	158	163	parallel
Strand 3	E	148	153	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	F	10	13	anti-parallel
Strand 3	F	171	174	parallel
Strand 4	F	132	136	parallel
Strand 5	F	90	95	parallel
Strand 6	F	32	37	parallel
Strand 7	F	60	65	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	63	first strand
Strand 2	G	34	35	parallel
Strand 3	G	91	95	parallel
Strand 4	G	132	136	parallel
Strand 5	G	171	174	parallel
Strand 6	G	10	13	parallel
Strand 7	F	3	6	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	121	122	first strand
Strand 2	F	159	163	parallel
Strand 3	F	148	152	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	A	10	14	anti-parallel
Strand 3	A	171	174	parallel
Strand 4	A	132	136	parallel
Strand 5	A	90	95	parallel
Strand 6	A	32	38	parallel
Strand 7	A	60	67	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	67	first strand
Strand 2	C	32	38	parallel
Strand 3	C	90	95	parallel
Strand 4	C	132	136	parallel
Strand 5	C	171	174	parallel
Strand 6	C	10	13	parallel
Strand 7	A	3	6	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	158	163	parallel
Strand 3	C	148	153	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	158	163	parallel
Strand 3	A	148	153	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	122	first strand
Strand 2	I	159	163	parallel
Strand 3	I	148	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZWD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZWD