Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZWQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZWQ entry

There are 4 chains in PDB entry 8ZWQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	ALA 248
C	THR 25	ALA 248
B	THR 25	ALA 248
D	THR 25	ALA 248

There are 8 helices in PDB entry 8ZWQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	121	125	Right-handed 310
Helix 2	AA2	A	172	177	Right-handed alpha
Helix 3	AA3	C	121	125	Right-handed 310
Helix 4	AA4	C	172	178	Right-handed alpha
Helix 5	AA5	B	121	125	Right-handed 310
Helix 6	AA6	B	172	178	Right-handed alpha
Helix 7	AA7	D	121	125	Right-handed 310
Helix 8	AA8	D	172	177	Right-handed alpha

There are 20 sheets in PDB entry 8ZWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	26	30	anti-parallel
Strand 3	A	245	247	parallel
Strand 4	C	245	247	anti-parallel
Strand 5	C	26	30	parallel
Strand 6	C	59	62	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	67	73	anti-parallel
Strand 3	A	103	111	anti-parallel
Strand 4	A	40	45	anti-parallel
Strand 5	A	34	37	anti-parallel
Strand 6	C	34	37	anti-parallel
Strand 7	C	40	45	anti-parallel
Strand 8	C	103	111	anti-parallel
Strand 9	C	67	73	anti-parallel
Strand 10	C	82	84	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	93	96	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	139	first strand
Strand 2	A	211	218	anti-parallel
Strand 3	A	166	170	anti-parallel
Strand 4	A	185	186	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	204	206	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	159	first strand
Strand 2	A	191	198	anti-parallel
Strand 3	A	180	182	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	93	96	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	139	first strand
Strand 2	C	211	218	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	185	186	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	204	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	159	first strand
Strand 2	C	191	198	anti-parallel
Strand 3	C	180	182	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	26	30	anti-parallel
Strand 3	B	245	247	parallel
Strand 4	D	245	247	anti-parallel
Strand 5	D	26	30	parallel
Strand 6	D	59	62	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	67	73	anti-parallel
Strand 3	B	103	111	anti-parallel
Strand 4	B	40	45	anti-parallel
Strand 5	B	34	37	anti-parallel
Strand 6	D	34	37	anti-parallel
Strand 7	D	40	45	anti-parallel
Strand 8	D	103	111	anti-parallel
Strand 9	D	67	74	anti-parallel
Strand 10	D	82	84	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	93	96	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	211	218	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	185	186	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	204	206	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	159	first strand
Strand 2	B	191	198	anti-parallel
Strand 3	B	180	182	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	93	96	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	211	218	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	185	186	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	204	206	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	159	first strand
Strand 2	D	191	198	anti-parallel
Strand 3	D	180	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZWQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZWQ