Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZXD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZXD entry

There are 6 chains in PDB entry 8ZXD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 106	GLU 505
B	ASP 106	GLU 505
C	ASP 106	GLU 505
D	ASP 106	GLU 505
E	ASP 106	GLU 505
F	ASP 106	GLU 505

There are 78 helices in PDB entry 8ZXD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	106	138	Right-handed alpha
Helix 2	AA2	A	147	172	Right-handed alpha
Helix 3	AA3	A	183	208	Right-handed alpha
Helix 4	AA4	A	216	242	Right-handed alpha
Helix 5	AA5	A	271	287	Right-handed alpha
Helix 6	AA6	A	291	309	Right-handed alpha
Helix 7	AA7	A	323	338	Right-handed alpha
Helix 8	AA8	A	341	383	Right-handed alpha
Helix 9	AA9	A	389	413	Right-handed alpha
Helix 10	AB1	A	419	434	Right-handed alpha
Helix 11	AB2	A	436	446	Right-handed alpha
Helix 12	AB3	A	449	453	Right-handed 310
Helix 13	AB4	A	454	458	Right-handed 310
Helix 14	AB5	B	107	138	Right-handed alpha
Helix 15	AB6	B	147	172	Right-handed alpha
Helix 16	AB7	B	183	208	Right-handed alpha
Helix 17	AB8	B	216	242	Right-handed alpha
Helix 18	AB9	B	271	287	Right-handed alpha
Helix 19	AC1	B	291	309	Right-handed alpha
Helix 20	AC2	B	323	338	Right-handed alpha
Helix 21	AC3	B	341	383	Right-handed alpha
Helix 22	AC4	B	389	413	Right-handed alpha
Helix 23	AC5	B	419	434	Right-handed alpha
Helix 24	AC6	B	436	446	Right-handed alpha
Helix 25	AC7	B	449	453	Right-handed 310
Helix 26	AC8	B	454	458	Right-handed 310
Helix 27	AC9	C	107	138	Right-handed alpha
Helix 28	AD1	C	147	172	Right-handed alpha
Helix 29	AD2	C	183	208	Right-handed alpha
Helix 30	AD3	C	216	242	Right-handed alpha
Helix 31	AD4	C	271	287	Right-handed alpha
Helix 32	AD5	C	291	309	Right-handed alpha
Helix 33	AD6	C	323	338	Right-handed alpha
Helix 34	AD7	C	341	383	Right-handed alpha
Helix 35	AD8	C	389	413	Right-handed alpha
Helix 36	AD9	C	419	434	Right-handed alpha
Helix 37	AE1	C	436	446	Right-handed alpha
Helix 38	AE2	C	449	453	Right-handed 310
Helix 39	AE3	C	454	458	Right-handed 310
Helix 40	AE4	D	107	138	Right-handed alpha
Helix 41	AE5	D	147	172	Right-handed alpha
Helix 42	AE6	D	183	208	Right-handed alpha
Helix 43	AE7	D	216	242	Right-handed alpha
Helix 44	AE8	D	271	287	Right-handed alpha
Helix 45	AE9	D	291	309	Right-handed alpha
Helix 46	AF1	D	323	338	Right-handed alpha
Helix 47	AF2	D	341	383	Right-handed alpha
Helix 48	AF3	D	389	413	Right-handed alpha
Helix 49	AF4	D	419	434	Right-handed alpha
Helix 50	AF5	D	436	446	Right-handed alpha
Helix 51	AF6	D	449	453	Right-handed 310
Helix 52	AF7	D	454	458	Right-handed 310
Helix 53	AF8	E	107	138	Right-handed alpha
Helix 54	AF9	E	147	172	Right-handed alpha
Helix 55	AG1	E	183	208	Right-handed alpha
Helix 56	AG2	E	216	242	Right-handed alpha
Helix 57	AG3	E	271	287	Right-handed alpha
Helix 58	AG4	E	291	309	Right-handed alpha
Helix 59	AG5	E	323	338	Right-handed alpha
Helix 60	AG6	E	341	383	Right-handed alpha
Helix 61	AG7	E	389	413	Right-handed alpha
Helix 62	AG8	E	419	434	Right-handed alpha
Helix 63	AG9	E	436	446	Right-handed alpha
Helix 64	AH1	E	449	453	Right-handed 310
Helix 65	AH2	E	454	458	Right-handed 310
Helix 66	AH3	F	107	138	Right-handed alpha
Helix 67	AH4	F	147	172	Right-handed alpha
Helix 68	AH5	F	183	208	Right-handed alpha
Helix 69	AH6	F	216	242	Right-handed alpha
Helix 70	AH7	F	271	287	Right-handed alpha
Helix 71	AH8	F	291	309	Right-handed alpha
Helix 72	AH9	F	323	338	Right-handed alpha
Helix 73	AI1	F	341	383	Right-handed alpha
Helix 74	AI2	F	389	413	Right-handed alpha
Helix 75	AI3	F	419	434	Right-handed alpha
Helix 76	AI4	F	436	446	Right-handed alpha
Helix 77	AI5	F	449	453	Right-handed 310
Helix 78	AI6	F	454	458	Right-handed 310

There are 10 sheets in PDB entry 8ZXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	C	500	503	parallel
Strand 3	A	463	466	parallel
Strand 4	A	480	485	anti-parallel
Strand 5	A	488	496	anti-parallel
Strand 6	A	250	256	anti-parallel
Strand 7	A	262	267	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	B	177	178	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	250	256	anti-parallel
Strand 3	B	488	496	anti-parallel
Strand 4	B	480	485	anti-parallel
Strand 5	B	464	466	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	501	first strand
Strand 2	C	177	178	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	267	first strand
Strand 2	C	250	256	anti-parallel
Strand 3	C	488	496	anti-parallel
Strand 4	C	480	485	anti-parallel
Strand 5	C	464	466	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	178	first strand
Strand 2	F	500	503	parallel
Strand 3	D	463	466	parallel
Strand 4	D	480	485	anti-parallel
Strand 5	D	488	496	anti-parallel
Strand 6	D	250	256	anti-parallel
Strand 7	D	262	267	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	501	first strand
Strand 2	E	177	178	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	262	267	first strand
Strand 2	E	250	256	anti-parallel
Strand 3	E	488	496	anti-parallel
Strand 4	E	480	485	anti-parallel
Strand 5	E	464	466	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	500	501	first strand
Strand 2	F	177	178	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	262	267	first strand
Strand 2	F	250	256	anti-parallel
Strand 3	F	488	496	anti-parallel
Strand 4	F	480	485	anti-parallel
Strand 5	F	464	466	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZXD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZXD