Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZY1 entry

There are 3 chains in PDB entry 8ZY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 19	LEU 1127
B	LYS 19	LEU 1127
C	LYS 19	LEU 1127

There are 66 helices in PDB entry 8ZY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	285	295	Right-handed alpha
Helix 2	AA2	A	340	344	Right-handed 310
Helix 3	AA3	A	355	360	Right-handed 310
Helix 4	AA4	A	375	379	Right-handed 310
Helix 5	AA5	A	398	402	Right-handed 310
Helix 6	AA6	A	408	414	Right-handed alpha
Helix 7	AA7	A	606	611	Right-handed alpha
Helix 8	AA8	A	617	625	Right-handed alpha
Helix 9	AA9	A	732	737	Right-handed alpha
Helix 10	AB1	A	739	741	Right-handed 310
Helix 11	AB2	A	742	768	Right-handed alpha
Helix 12	AB3	A	802	809	Right-handed alpha
Helix 13	AB4	A	822	828	Right-handed alpha
Helix 14	AB5	A	834	841	Right-handed alpha
Helix 15	AB6	A	852	871	Right-handed alpha
Helix 16	AB7	A	872	876	Right-handed 310
Helix 17	AB8	A	883	894	Right-handed alpha
Helix 18	AB9	A	899	905	Right-handed alpha
Helix 19	AC1	A	905	926	Right-handed alpha
Helix 20	AC2	A	928	930	Right-handed 310
Helix 21	AC3	A	931	951	Right-handed alpha
Helix 22	AC4	A	952	954	Right-handed 310
Helix 23	AC5	A	962	970	Right-handed alpha
Helix 24	AC6	A	971	1019	Right-handed alpha
Helix 25	AC7	B	285	295	Right-handed alpha
Helix 26	AC8	B	329	334	Right-handed alpha
Helix 27	AC9	B	357	362	Right-handed alpha
Helix 28	AD1	B	375	379	Right-handed 310
Helix 29	AD2	B	398	402	Right-handed 310
Helix 30	AD3	B	409	414	Right-handed alpha
Helix 31	AD4	B	612	616	Right-handed 310
Helix 32	AD5	B	617	622	Right-handed alpha
Helix 33	AD6	B	732	740	Right-handed alpha
Helix 34	AD7	B	742	769	Right-handed alpha
Helix 35	AD8	B	802	809	Right-handed alpha
Helix 36	AD9	B	834	841	Right-handed alpha
Helix 37	AE1	B	852	871	Right-handed alpha
Helix 38	AE2	B	872	876	Right-handed 310
Helix 39	AE3	B	883	894	Right-handed alpha
Helix 40	AE4	B	899	905	Right-handed alpha
Helix 41	AE5	B	905	926	Right-handed alpha
Helix 42	AE6	B	931	951	Right-handed alpha
Helix 43	AE7	B	952	954	Right-handed 310
Helix 44	AE8	B	962	968	Right-handed alpha
Helix 45	AE9	B	971	1019	Right-handed alpha
Helix 46	AF1	C	285	295	Right-handed alpha
Helix 47	AF2	C	328	334	Right-handed alpha
Helix 48	AF3	C	355	362	Right-handed 310
Helix 49	AF4	C	375	379	Right-handed 310
Helix 50	AF5	C	408	414	Right-handed alpha
Helix 51	AF6	C	606	610	Right-handed 310
Helix 52	AF7	C	617	625	Right-handed alpha
Helix 53	AF8	C	732	737	Right-handed alpha
Helix 54	AF9	C	739	741	Right-handed 310
Helix 55	AG1	C	742	768	Right-handed alpha
Helix 56	AG2	C	789	792	Right-handed 310
Helix 57	AG3	C	802	809	Right-handed alpha
Helix 58	AG4	C	822	827	Right-handed alpha
Helix 59	AG5	C	834	841	Right-handed alpha
Helix 60	AG6	C	852	870	Right-handed alpha
Helix 61	AG7	C	883	896	Right-handed alpha
Helix 62	AG8	C	899	905	Right-handed alpha
Helix 63	AG9	C	905	927	Right-handed alpha
Helix 64	AH1	C	931	951	Right-handed alpha
Helix 65	AH2	C	962	968	Right-handed alpha
Helix 66	AH3	C	975	1019	Right-handed alpha

There are 46 sheets in PDB entry 8ZY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	66	71	anti-parallel
Strand 3	A	255	260	anti-parallel
Strand 4	A	94	100	anti-parallel
Strand 5	A	185	194	anti-parallel
Strand 6	A	197	206	anti-parallel
Strand 7	A	219	226	anti-parallel
Strand 8	A	41	42	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	B	552	554	parallel
Strand 3	B	560	564	anti-parallel
Strand 4	B	571	575	anti-parallel
Strand 5	B	533	541	anti-parallel
Strand 6	B	525	530	anti-parallel
Strand 7	B	316	319	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	276	281	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	234	237	anti-parallel
Strand 3	A	108	111	anti-parallel
Strand 4	A	120	125	anti-parallel
Strand 5	A	130	137	anti-parallel
Strand 6	A	161	169	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	156	first strand
Strand 2	A	144	148	anti-parallel
Strand 3	A	239	241	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	582	586	anti-parallel
Strand 3	A	596	599	anti-parallel
Strand 4	A	637	640	anti-parallel
Strand 5	A	631	634	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	319	first strand
Strand 2	A	525	530	parallel
Strand 3	A	536	541	anti-parallel
Strand 4	A	571	575	anti-parallel
Strand 5	A	560	564	anti-parallel
Strand 6	A	552	554	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	387	394	anti-parallel
Strand 3	A	495	501	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	368	372	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	511	512	parallel
Strand 3	A	383	384	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	479	481	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	644	first strand
Strand 2	A	677	682	parallel
Strand 3	A	659	664	anti-parallel
Strand 4	A	653	656	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	714	first strand
Strand 2	A	1045	1062	anti-parallel
Strand 3	A	1033	1042	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	844	847	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	773	774	first strand
Strand 2	B	687	688	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	783	first strand
Strand 2	A	786	787	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1111	first strand
Strand 2	A	1072	1076	anti-parallel
Strand 3	A	1066	1068	anti-parallel
Strand 4	A	1118	1120	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1080	1083	first strand
Strand 2	A	1088	1091	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	219	226	parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	185	192	anti-parallel
Strand 5	B	94	100	anti-parallel
Strand 6	B	255	258	anti-parallel
Strand 7	B	68	71	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	262	270	anti-parallel
Strand 3	B	276	281	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	234	237	anti-parallel
Strand 3	B	108	111	anti-parallel
Strand 4	B	120	125	anti-parallel
Strand 5	B	130	137	anti-parallel
Strand 6	B	161	162	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	144	148	anti-parallel
Strand 3	B	241	242	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	306	first strand
Strand 2	B	582	586	anti-parallel
Strand 3	B	596	599	anti-parallel
Strand 4	B	638	640	anti-parallel
Strand 5	B	631	633	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	387	394	anti-parallel
Strand 3	B	495	501	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	368	372	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	511	512	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	479	481	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	644	first strand
Strand 2	B	677	682	parallel
Strand 3	B	659	664	anti-parallel
Strand 4	B	653	654	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	714	first strand
Strand 2	B	1045	1064	anti-parallel
Strand 3	B	1033	1042	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	714	first strand
Strand 2	B	1045	1064	anti-parallel
Strand 3	B	1080	1083	anti-parallel
Strand 4	B	1088	1091	anti-parallel
Strand 5	B	1099	1100	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	844	847	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	783	first strand
Strand 2	B	786	787	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1106	1111	first strand
Strand 2	B	1072	1076	anti-parallel
Strand 3	B	1067	1068	anti-parallel
Strand 4	B	1119	1120	parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	255	258	anti-parallel
Strand 4	C	94	100	anti-parallel
Strand 5	C	185	194	anti-parallel
Strand 6	C	197	206	anti-parallel
Strand 7	C	219	226	anti-parallel
Strand 8	C	41	42	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	60	first strand
Strand 2	C	262	270	anti-parallel
Strand 3	C	276	281	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	C	234	237	anti-parallel
Strand 3	C	108	111	anti-parallel
Strand 4	C	121	125	anti-parallel
Strand 5	C	129	133	anti-parallel
Strand 6	C	167	171	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	158	first strand
Strand 2	C	139	148	anti-parallel
Strand 3	C	239	241	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	305	first strand
Strand 2	C	582	587	anti-parallel
Strand 3	C	596	599	anti-parallel
Strand 4	C	637	640	anti-parallel
Strand 5	C	631	634	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	387	394	anti-parallel
Strand 3	C	495	501	anti-parallel
Strand 4	C	423	429	anti-parallel
Strand 5	C	368	372	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	511	512	parallel
Strand 3	C	383	384	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	442	first strand
Strand 2	C	479	481	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	530	first strand
Strand 2	C	533	541	anti-parallel
Strand 3	C	572	575	anti-parallel
Strand 4	C	560	563	anti-parallel
Strand 5	C	552	554	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	643	649	first strand
Strand 2	C	677	683	parallel
Strand 3	C	659	664	anti-parallel
Strand 4	C	653	656	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	697	714	first strand
Strand 2	C	1045	1064	anti-parallel
Strand 3	C	1033	1042	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	697	714	first strand
Strand 2	C	1045	1064	anti-parallel
Strand 3	C	1081	1082	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	722	first strand
Strand 2	C	844	847	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	782	783	first strand
Strand 2	C	786	787	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1106	1111	first strand
Strand 2	C	1072	1076	anti-parallel
Strand 3	C	1066	1068	anti-parallel
Strand 4	C	1118	1120	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY1