Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZY4 entry

There are 3 chains in PDB entry 8ZY4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 15	PRO 1100
B	THR 15	PRO 1100
C	THR 15	PRO 1100

There are 81 helices in PDB entry 8ZY4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	277	287	Right-handed alpha
Helix 2	AA2	A	320	326	Right-handed alpha
Helix 3	AA3	A	332	336	Right-handed 310
Helix 4	AA4	A	347	352	Right-handed 310
Helix 5	AA5	A	388	393	Right-handed 310
Helix 6	AA6	A	466	469	Right-handed 310
Helix 7	AA7	A	583	588	Right-handed alpha
Helix 8	AA8	A	589	593	Right-handed 310
Helix 9	AA9	A	594	599	Right-handed alpha
Helix 10	AB1	A	697	704	Right-handed alpha
Helix 11	AB2	A	706	713	Right-handed alpha
Helix 12	AB3	A	717	743	Right-handed alpha
Helix 13	AB4	A	776	783	Right-handed alpha
Helix 14	AB5	A	798	803	Right-handed alpha
Helix 15	AB6	A	808	816	Right-handed alpha
Helix 16	AB7	A	826	844	Right-handed alpha
Helix 17	AB8	A	846	851	Right-handed 310
Helix 18	AB9	A	858	869	Right-handed alpha
Helix 19	AC1	A	873	879	Right-handed alpha
Helix 20	AC2	A	879	892	Right-handed alpha
Helix 21	AC3	A	905	916	Right-handed alpha
Helix 22	AC4	A	918	925	Right-handed alpha
Helix 23	AC5	A	936	942	Right-handed alpha
Helix 24	AC6	A	945	993	Right-handed alpha
Helix 25	AC7	B	264	266	Right-handed 310
Helix 26	AC8	B	277	287	Right-handed alpha
Helix 27	AC9	B	332	336	Right-handed 310
Helix 28	AD1	B	347	352	Right-handed 310
Helix 29	AD2	B	388	393	Right-handed 310
Helix 30	AD3	B	466	469	Right-handed 310
Helix 31	AD4	B	532	536	Right-handed 310
Helix 32	AD5	B	583	588	Right-handed alpha
Helix 33	AD6	B	589	593	Right-handed 310
Helix 34	AD7	B	594	599	Right-handed alpha
Helix 35	AD8	B	697	703	Right-handed alpha
Helix 36	AD9	B	706	713	Right-handed alpha
Helix 37	AE1	B	717	730	Right-handed alpha
Helix 38	AE2	B	732	743	Right-handed alpha
Helix 39	AE3	B	763	766	Right-handed 310
Helix 40	AE4	B	776	783	Right-handed alpha
Helix 41	AE5	B	798	803	Right-handed alpha
Helix 42	AE6	B	808	815	Right-handed alpha
Helix 43	AE7	B	826	844	Right-handed alpha
Helix 44	AE8	B	846	851	Right-handed 310
Helix 45	AE9	B	858	869	Right-handed alpha
Helix 46	AF1	B	872	879	Right-handed alpha
Helix 47	AF2	B	879	892	Right-handed alpha
Helix 48	AF3	B	896	901	Right-handed alpha
Helix 49	AF4	B	905	925	Right-handed alpha
Helix 50	AF5	B	936	942	Right-handed alpha
Helix 51	AF6	B	945	993	Right-handed alpha
Helix 52	AF7	B	1087	1089	Right-handed 310
Helix 53	AF8	C	277	287	Right-handed alpha
Helix 54	AF9	C	321	326	Right-handed alpha
Helix 55	AG1	C	332	336	Right-handed 310
Helix 56	AG2	C	347	352	Right-handed 310
Helix 57	AG3	C	369	372	Right-handed 310
Helix 58	AG4	C	388	393	Right-handed 310
Helix 59	AG5	C	399	405	Right-handed alpha
Helix 60	AG6	C	466	469	Right-handed 310
Helix 61	AG7	C	583	588	Right-handed alpha
Helix 62	AG8	C	589	593	Right-handed 310
Helix 63	AG9	C	594	599	Right-handed alpha
Helix 64	AH1	C	697	704	Right-handed alpha
Helix 65	AH2	C	706	713	Right-handed alpha
Helix 66	AH3	C	717	730	Right-handed alpha
Helix 67	AH4	C	732	743	Right-handed alpha
Helix 68	AH5	C	763	766	Right-handed 310
Helix 69	AH6	C	776	783	Right-handed alpha
Helix 70	AH7	C	803	807	Right-handed 310
Helix 71	AH8	C	808	816	Right-handed alpha
Helix 72	AH9	C	826	844	Right-handed alpha
Helix 73	AI1	C	846	851	Right-handed 310
Helix 74	AI2	C	858	868	Right-handed alpha
Helix 75	AI3	C	872	879	Right-handed alpha
Helix 76	AI4	C	879	892	Right-handed alpha
Helix 77	AI5	C	896	901	Right-handed alpha
Helix 78	AI6	C	905	916	Right-handed alpha
Helix 79	AI7	C	918	925	Right-handed alpha
Helix 80	AI8	C	936	942	Right-handed alpha
Helix 81	AI9	C	945	993	Right-handed alpha

There are 50 sheets in PDB entry 8ZY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	62	68	anti-parallel
Strand 3	A	246	252	anti-parallel
Strand 4	A	84	90	anti-parallel
Strand 5	A	175	186	anti-parallel
Strand 6	A	189	201	anti-parallel
Strand 7	A	211	219	anti-parallel
Strand 8	A	37	38	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	56	first strand
Strand 2	A	254	262	anti-parallel
Strand 3	A	268	273	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	226	235	anti-parallel
Strand 3	A	97	101	anti-parallel
Strand 4	A	110	115	anti-parallel
Strand 5	A	120	125	anti-parallel
Strand 6	A	157	160	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	151	first strand
Strand 2	A	128	138	anti-parallel
Strand 3	A	226	235	parallel
Strand 4	A	241	242	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	297	first strand
Strand 2	A	559	563	anti-parallel
Strand 3	A	573	576	anti-parallel
Strand 4	A	612	615	anti-parallel
Strand 5	A	606	609	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	A	502	506	parallel
Strand 3	A	510	517	anti-parallel
Strand 4	A	549	552	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	378	386	anti-parallel
Strand 3	A	471	478	anti-parallel
Strand 4	A	414	420	anti-parallel
Strand 5	A	359	363	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	488	489	parallel
Strand 3	A	374	375	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	432	first strand
Strand 2	A	456	460	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	624	first strand
Strand 2	A	651	657	parallel
Strand 3	A	634	639	anti-parallel
Strand 4	A	628	631	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	663	first strand
Strand 2	B	747	749	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	1032	1038	anti-parallel
Strand 3	A	1054	1057	anti-parallel
Strand 4	A	1062	1065	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	688	first strand
Strand 2	A	1019	1029	anti-parallel
Strand 3	A	1007	1016	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	696	first strand
Strand 2	A	818	821	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	C	661	663	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	756	757	first strand
Strand 2	A	760	761	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1080	1085	first strand
Strand 2	A	1046	1050	anti-parallel
Strand 3	A	1041	1042	anti-parallel
Strand 4	A	1093	1094	parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	62	68	anti-parallel
Strand 3	B	246	252	anti-parallel
Strand 4	B	84	90	anti-parallel
Strand 5	B	175	186	anti-parallel
Strand 6	B	189	201	anti-parallel
Strand 7	B	211	219	anti-parallel
Strand 8	B	37	38	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	56	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	268	273	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	226	235	anti-parallel
Strand 3	B	97	101	anti-parallel
Strand 4	B	110	115	anti-parallel
Strand 5	B	120	128	anti-parallel
Strand 6	B	151	153	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	226	235	parallel
Strand 3	B	241	242	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	298	first strand
Strand 2	B	559	563	anti-parallel
Strand 3	B	573	576	anti-parallel
Strand 4	B	612	615	anti-parallel
Strand 5	B	606	609	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	505	506	parallel
Strand 3	B	510	511	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	378	386	anti-parallel
Strand 3	B	471	478	anti-parallel
Strand 4	B	414	420	anti-parallel
Strand 5	B	359	363	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	488	489	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	432	first strand
Strand 2	B	456	459	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	517	first strand
Strand 2	B	549	552	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	624	first strand
Strand 2	B	651	657	parallel
Strand 3	B	634	639	anti-parallel
Strand 4	B	628	631	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	663	first strand
Strand 2	C	747	749	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	1032	1038	anti-parallel
Strand 3	B	1054	1057	anti-parallel
Strand 4	B	1062	1065	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	688	first strand
Strand 2	B	1019	1029	anti-parallel
Strand 3	B	1007	1016	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	696	first strand
Strand 2	B	818	821	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	757	first strand
Strand 2	B	760	761	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1080	1085	first strand
Strand 2	B	1046	1050	anti-parallel
Strand 3	B	1041	1042	anti-parallel
Strand 4	B	1093	1094	parallel

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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	62	68	anti-parallel
Strand 3	C	246	252	anti-parallel
Strand 4	C	84	90	anti-parallel
Strand 5	C	175	186	anti-parallel
Strand 6	C	189	201	anti-parallel
Strand 7	C	211	219	anti-parallel
Strand 8	C	37	38	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	56	first strand
Strand 2	C	254	262	anti-parallel
Strand 3	C	268	273	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	226	235	anti-parallel
Strand 3	C	97	101	anti-parallel
Strand 4	C	110	115	anti-parallel
Strand 5	C	120	125	anti-parallel
Strand 6	C	157	160	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	226	235	parallel
Strand 3	C	241	242	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	298	first strand
Strand 2	C	559	563	anti-parallel
Strand 3	C	573	576	anti-parallel
Strand 4	C	612	615	anti-parallel
Strand 5	C	606	609	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	309	first strand
Strand 2	C	502	506	parallel
Strand 3	C	510	517	anti-parallel
Strand 4	C	549	552	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	341	first strand
Strand 2	C	378	386	anti-parallel
Strand 3	C	471	478	anti-parallel
Strand 4	C	414	420	anti-parallel
Strand 5	C	359	363	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	488	489	parallel
Strand 3	C	374	375	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	428	432	first strand
Strand 2	C	456	460	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	655	657	parallel
Strand 3	C	634	636	anti-parallel
Strand 4	C	628	631	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	639	first strand
Strand 2	C	651	652	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	672	675	first strand
Strand 2	C	1032	1038	anti-parallel
Strand 3	C	1054	1057	anti-parallel
Strand 4	C	1062	1065	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	678	688	first strand
Strand 2	C	1019	1029	anti-parallel
Strand 3	C	1007	1016	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	693	696	first strand
Strand 2	C	818	821	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	756	757	first strand
Strand 2	C	760	761	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1080	1085	first strand
Strand 2	C	1046	1050	anti-parallel
Strand 3	C	1041	1042	anti-parallel
Strand 4	C	1093	1094	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZY4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY4