Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZY5 entry

There are 3 chains in PDB entry 8ZY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 24	LEU 1095
B	LYS 24	LEU 1095
C	LYS 24	LEU 1095

There are 53 helices in PDB entry 8ZY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	273	282	Right-handed alpha
Helix 2	AA2	A	317	322	Right-handed alpha
Helix 3	AA3	A	345	349	Right-handed 310
Helix 4	AA4	A	362	366	Right-handed 310
Helix 5	AA5	A	385	389	Right-handed 310
Helix 6	AA6	A	396	401	Right-handed alpha
Helix 7	AA7	A	579	585	Right-handed alpha
Helix 8	AA8	A	592	598	Right-handed alpha
Helix 9	AA9	A	700	708	Right-handed alpha
Helix 10	AB1	A	710	737	Right-handed alpha
Helix 11	AB2	A	770	780	Right-handed alpha
Helix 12	AB3	A	820	838	Right-handed alpha
Helix 13	AB4	A	851	861	Right-handed alpha
Helix 14	AB5	A	873	895	Right-handed alpha
Helix 15	AB6	A	899	920	Right-handed alpha
Helix 16	AB7	A	930	938	Right-handed alpha
Helix 17	AB8	A	939	987	Right-handed alpha
Helix 18	AB9	B	273	282	Right-handed alpha
Helix 19	AC1	B	317	322	Right-handed alpha
Helix 20	AC2	B	345	349	Right-handed 310
Helix 21	AC3	B	362	366	Right-handed 310
Helix 22	AC4	B	385	389	Right-handed 310
Helix 23	AC5	B	396	401	Right-handed alpha
Helix 24	AC6	B	579	585	Right-handed alpha
Helix 25	AC7	B	592	598	Right-handed alpha
Helix 26	AC8	B	700	708	Right-handed alpha
Helix 27	AC9	B	710	737	Right-handed alpha
Helix 28	AD1	B	770	780	Right-handed alpha
Helix 29	AD2	B	807	811	Right-handed 310
Helix 30	AD3	B	820	838	Right-handed alpha
Helix 31	AD4	B	839	843	Right-handed 310
Helix 32	AD5	B	851	861	Right-handed alpha
Helix 33	AD6	B	873	895	Right-handed alpha
Helix 34	AD7	B	899	920	Right-handed alpha
Helix 35	AD8	B	930	938	Right-handed alpha
Helix 36	AD9	B	939	987	Right-handed alpha
Helix 37	AE1	C	273	282	Right-handed alpha
Helix 38	AE2	C	317	322	Right-handed alpha
Helix 39	AE3	C	345	349	Right-handed 310
Helix 40	AE4	C	362	366	Right-handed 310
Helix 41	AE5	C	385	389	Right-handed 310
Helix 42	AE6	C	579	585	Right-handed alpha
Helix 43	AE7	C	592	598	Right-handed alpha
Helix 44	AE8	C	700	708	Right-handed alpha
Helix 45	AE9	C	711	737	Right-handed alpha
Helix 46	AF1	C	770	780	Right-handed alpha
Helix 47	AF2	C	820	838	Right-handed alpha
Helix 48	AF3	C	839	843	Right-handed 310
Helix 49	AF4	C	851	861	Right-handed alpha
Helix 50	AF5	C	873	895	Right-handed alpha
Helix 51	AF6	C	899	920	Right-handed alpha
Helix 52	AF7	C	930	938	Right-handed alpha
Helix 53	AF8	C	939	987	Right-handed alpha

There are 48 sheets in PDB entry 8ZY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	53	first strand
Strand 2	A	250	258	anti-parallel
Strand 3	A	264	267	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	226	230	anti-parallel
Strand 3	A	94	98	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	218	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	176	182	anti-parallel
Strand 4	A	81	85	anti-parallel
Strand 5	A	244	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	126	first strand
Strand 2	A	145	156	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	555	559	anti-parallel
Strand 3	A	569	572	anti-parallel
Strand 4	A	608	611	anti-parallel
Strand 5	A	602	605	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	307	first strand
Strand 2	A	499	503	parallel
Strand 3	A	506	514	anti-parallel
Strand 4	A	544	548	anti-parallel
Strand 5	A	532	537	anti-parallel
Strand 6	A	525	528	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	337	first strand
Strand 2	A	373	382	anti-parallel
Strand 3	A	467	476	anti-parallel
Strand 4	A	410	416	anti-parallel
Strand 5	A	355	359	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	428	first strand
Strand 2	A	452	457	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	615	first strand
Strand 2	A	646	650	parallel
Strand 3	A	630	633	anti-parallel
Strand 4	A	624	627	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	657	first strand
Strand 2	B	742	743	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	682	first strand
Strand 2	A	1013	1031	anti-parallel
Strand 3	A	1004	1010	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	682	first strand
Strand 2	A	1013	1031	anti-parallel
Strand 3	A	1048	1051	anti-parallel
Strand 4	A	1056	1059	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	689	first strand
Strand 2	A	813	815	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	743	first strand
Strand 2	C	656	657	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	751	first strand
Strand 2	A	754	755	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1074	1076	first strand
Strand 2	A	1040	1044	anti-parallel
Strand 3	A	1035	1037	anti-parallel
Strand 4	A	1087	1088	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	53	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	264	267	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	226	232	anti-parallel
Strand 3	B	92	98	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	226	232	anti-parallel
Strand 3	B	131	132	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	185	191	anti-parallel
Strand 3	B	176	182	anti-parallel
Strand 4	B	81	85	anti-parallel
Strand 5	B	244	246	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	126	first strand
Strand 2	B	145	156	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	293	first strand
Strand 2	B	555	559	anti-parallel
Strand 3	B	569	572	anti-parallel
Strand 4	B	608	611	anti-parallel
Strand 5	B	602	605	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	499	503	parallel
Strand 3	B	506	514	anti-parallel
Strand 4	B	544	548	anti-parallel
Strand 5	B	532	537	anti-parallel
Strand 6	B	525	528	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	337	first strand
Strand 2	B	373	382	anti-parallel
Strand 3	B	467	476	anti-parallel
Strand 4	B	410	416	anti-parallel
Strand 5	B	355	359	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	428	first strand
Strand 2	B	452	457	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	615	first strand
Strand 2	B	646	650	parallel
Strand 3	B	630	633	anti-parallel
Strand 4	B	624	627	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	657	first strand
Strand 2	C	742	743	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	682	first strand
Strand 2	B	1013	1031	anti-parallel
Strand 3	B	1004	1010	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	665	682	first strand
Strand 2	B	1013	1031	anti-parallel
Strand 3	B	1048	1051	anti-parallel
Strand 4	B	1056	1059	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	689	first strand
Strand 2	B	813	815	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	751	first strand
Strand 2	B	754	755	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1074	1076	first strand
Strand 2	B	1040	1044	anti-parallel
Strand 3	B	1035	1037	anti-parallel
Strand 4	B	1087	1088	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	53	first strand
Strand 2	C	250	258	anti-parallel
Strand 3	C	264	267	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	226	232	anti-parallel
Strand 3	C	94	98	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	76	first strand
Strand 2	C	226	232	anti-parallel
Strand 3	C	131	132	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	218	first strand
Strand 2	C	185	191	anti-parallel
Strand 3	C	176	182	anti-parallel
Strand 4	C	81	85	anti-parallel
Strand 5	C	244	246	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	126	first strand
Strand 2	C	145	156	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	293	first strand
Strand 2	C	555	559	anti-parallel
Strand 3	C	569	572	anti-parallel
Strand 4	C	608	611	anti-parallel
Strand 5	C	602	605	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	307	first strand
Strand 2	C	499	503	parallel
Strand 3	C	506	514	anti-parallel
Strand 4	C	544	548	anti-parallel
Strand 5	C	532	537	anti-parallel
Strand 6	C	525	528	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	337	first strand
Strand 2	C	373	382	anti-parallel
Strand 3	C	467	476	anti-parallel
Strand 4	C	410	416	anti-parallel
Strand 5	C	355	359	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	C	484	485	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	428	first strand
Strand 2	C	452	457	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	615	first strand
Strand 2	C	646	650	parallel
Strand 3	C	630	633	anti-parallel
Strand 4	C	624	627	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	665	682	first strand
Strand 2	C	1013	1031	anti-parallel
Strand 3	C	1004	1010	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	665	682	first strand
Strand 2	C	1013	1031	anti-parallel
Strand 3	C	1048	1051	anti-parallel
Strand 4	C	1056	1059	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	687	689	first strand
Strand 2	C	813	815	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	751	first strand
Strand 2	C	754	755	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1074	1076	first strand
Strand 2	C	1040	1044	anti-parallel
Strand 3	C	1035	1037	anti-parallel
Strand 4	C	1087	1088	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY5