Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZY9 entry

There are 4 chains in PDB entry 8ZY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 324	PHE 504
D	SER 19	LEU 724
B	ASN 324	GLU 505
C	SER 19	LEU 724

There are 77 helices in PDB entry 8ZY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	328	333	Right-handed alpha
Helix 2	AA2	A	355	360	Right-handed alpha
Helix 3	AA3	A	407	413	Right-handed alpha
Helix 4	AA4	D	21	52	Right-handed alpha
Helix 5	AA5	D	58	81	Right-handed alpha
Helix 6	AA6	D	90	100	Right-handed alpha
Helix 7	AA7	D	109	130	Right-handed alpha
Helix 8	AA8	D	147	155	Right-handed alpha
Helix 9	AA9	D	157	168	Right-handed alpha
Helix 10	AB1	D	172	194	Right-handed alpha
Helix 11	AB2	D	198	204	Right-handed alpha
Helix 12	AB3	D	218	233	Right-handed alpha
Helix 13	AB4	D	233	248	Right-handed alpha
Helix 14	AB5	D	275	279	Right-handed 310
Helix 15	AB6	D	293	299	Right-handed alpha
Helix 16	AB7	D	303	319	Right-handed alpha
Helix 17	AB8	D	325	331	Right-handed alpha
Helix 18	AB9	D	365	385	Right-handed alpha
Helix 19	AC1	D	386	388	Right-handed 310
Helix 20	AC2	D	389	393	Right-handed 310
Helix 21	AC3	D	399	409	Right-handed alpha
Helix 22	AC4	D	416	421	Right-handed alpha
Helix 23	AC5	D	431	446	Right-handed alpha
Helix 24	AC6	D	449	465	Right-handed alpha
Helix 25	AC7	D	469	471	Right-handed 310
Helix 26	AC8	D	472	484	Right-handed alpha
Helix 27	AC9	D	499	502	Right-handed 310
Helix 28	AD1	D	503	508	Right-handed alpha
Helix 29	AD2	D	512	533	Right-handed alpha
Helix 30	AD3	D	538	542	Right-handed 310
Helix 31	AD4	D	547	560	Right-handed alpha
Helix 32	AD5	D	565	575	Right-handed alpha
Helix 33	AD6	D	581	588	Right-handed alpha
Helix 34	AD7	D	588	599	Right-handed alpha
Helix 35	AD8	D	636	658	Right-handed alpha
Helix 36	AD9	D	695	706	Right-handed alpha
Helix 37	AE1	D	706	713	Right-handed alpha
Helix 38	AE2	B	339	343	Right-handed 310
Helix 39	AE3	B	355	360	Right-handed alpha
Helix 40	AE4	B	407	413	Right-handed alpha
Helix 41	AE5	C	24	52	Right-handed alpha
Helix 42	AE6	C	58	62	Right-handed 310
Helix 43	AE7	C	65	80	Right-handed alpha
Helix 44	AE8	C	90	95	Right-handed alpha
Helix 45	AE9	C	95	100	Right-handed alpha
Helix 46	AF1	C	109	130	Right-handed alpha
Helix 47	AF2	C	147	155	Right-handed alpha
Helix 48	AF3	C	157	168	Right-handed alpha
Helix 49	AF4	C	172	194	Right-handed alpha
Helix 50	AF5	C	198	204	Right-handed alpha
Helix 51	AF6	C	218	233	Right-handed alpha
Helix 52	AF7	C	233	248	Right-handed alpha
Helix 53	AF8	C	275	279	Right-handed 310
Helix 54	AF9	C	293	300	Right-handed alpha
Helix 55	AG1	C	303	319	Right-handed alpha
Helix 56	AG2	C	325	331	Right-handed alpha
Helix 57	AG3	C	365	385	Right-handed alpha
Helix 58	AG4	C	386	388	Right-handed 310
Helix 59	AG5	C	389	393	Right-handed 310
Helix 60	AG6	C	397	411	Right-handed alpha
Helix 61	AG7	C	416	421	Right-handed alpha
Helix 62	AG8	C	431	444	Right-handed alpha
Helix 63	AG9	C	449	465	Right-handed alpha
Helix 64	AH1	C	469	471	Right-handed 310
Helix 65	AH2	C	472	484	Right-handed alpha
Helix 66	AH3	C	499	502	Right-handed 310
Helix 67	AH4	C	503	508	Right-handed alpha
Helix 68	AH5	C	512	533	Right-handed alpha
Helix 69	AH6	C	538	542	Right-handed 310
Helix 70	AH7	C	547	560	Right-handed alpha
Helix 71	AH8	C	565	575	Right-handed alpha
Helix 72	AH9	C	581	588	Right-handed alpha
Helix 73	AI1	C	588	599	Right-handed alpha
Helix 74	AI2	C	638	657	Right-handed alpha
Helix 75	AI3	C	695	706	Right-handed alpha
Helix 76	AI4	C	707	712	Right-handed alpha
Helix 77	AI5	C	713	715	Right-handed 310

There are 14 sheets in PDB entry 8ZY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	422	428	anti-parallel
Strand 3	A	497	503	anti-parallel
Strand 4	A	388	393	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	443	first strand
Strand 2	A	481	483	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	463	first strand
Strand 2	A	477	478	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	141	142	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	352	first strand
Strand 2	D	355	359	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	618	621	first strand
Strand 2	D	679	684	anti-parallel
Strand 3	D	669	672	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	389	393	anti-parallel
Strand 3	B	497	501	anti-parallel
Strand 4	B	424	428	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	504	505	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	443	first strand
Strand 2	B	481	483	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	463	first strand
Strand 2	B	477	478	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	487	488	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	352	first strand
Strand 2	C	355	359	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	679	684	anti-parallel
Strand 3	C	669	672	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZY9